PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013074.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 225aa MW: 23985.3 Da PI: 9.2522

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013074.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2.1e-41	31	131	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r+d ++slvyeA+ r+rdPvyG++gvi++lqqq+++l+ael++++ Pbr013074.1 31 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLLEVAENQRPDPANSLVYEANLRLRDPVYGCMGVISALQQQIQSLQAELNAVR 128 7***********************************************************************************************99 PP DUF260 99 eel 101 +++ Pbr013074.1 129 TQI 131 885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.435	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-41	31	128	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGTTRISSSS FGVPHQGMTM MSTTTLNTIT PCAACKLLRR RCAEECPFSP YFSPHEPQKF 60 SAVHKVFGAS NVSKMLLEVA ENQRPDPANS LVYEANLRLR DPVYGCMGVI SALQQQIQSL 120 QAELNAVRTQ ILRHKFKEAT SPSIVSTRGI IHHAALVSNS GMVSIAAQPQ AISPPPPLPL 180 PPVAAPSSVV FSSSSSSSAS SLYNPSTNTT GYSSISSKNV PYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	24	138	4	118	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	24	138	4	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013074.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354353.1	1e-163	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	8e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A498KEF5	1e-125	A0A498KEF5_MALDO; Uncharacterized protein
STRING	XP_009354353.1	1e-163	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	9e-59	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]