PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013131.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 812aa    MW: 88455.1 Da    PI: 4.8615
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013131.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-10761810248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +rW+  E++ l  +v+++G g+W++I +      k Rt  ++k++w++ +
      Pbr013131.1 761 KRWSLLEEDTLRTGVQKYGEGSWSLILKSYSdifKERTQVDLKDKWRNMK 810
                      59*********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.076755811IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-12756809IPR009057Homeodomain-like
SMARTSM007170.0024759811IPR001005SANT/Myb domain
CDDcd116601.06E-18761810No hitNo description
SuperFamilySSF466891.96E-13762809IPR009057Homeodomain-like
PfamPF002498.3E-8762810IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MDPDVDVSRW VIELLLRDRE KDCIAKRLLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS  60
ETILETLEMI EDLDIREGTA TTESMKAAYC SVATECTVKF LVGFMGKPSG KYLESVDRIW  120
RGRVGVLERS GRSQLVSAEL RHRMEEIEAG VWDLRVSKKL SSMNTRNDAL RSVSVYVKEA  180
LALLGPPFIT WAIRLNVPME VADLEADHIA VVNEVNVGGG SEFEGQMEKG ANARNGPELE  240
VQMANGANAG EGCSDLEAQM VNGAKGDGGS ELETQIANRA NVGGGGSEME AQLRDEANVG  300
PSGSELEDEV VRVTNVGGRS DMEVQMENGT GVGDNSELEE QMVNGTNVGH GFQLEEQTKN  360
GTNVAGHSEL EAQMVSRGRA NVVDGSEPQA QTGNGTNESD GSQRHAQTTN GSNVGSQSEL  420
EAQPVNGANV RDGCTYEGQM VNGANVSNGS ELGPILVAVP LKEVRAGSLL PTVSRGLVLN  480
DLVEIDSGFR NRVHRSADDQ APGQVNEIGL AIPSRNGELG LSIDHTTKDK ENQRSTMPRR  540
KHLAHRRTRG PIRIRDAEDL GTDVSDGKYG SLDTPEVNRA QEALKSSISE LQELVTDPLP  600
DALRVSETVR SSLAMRSVSH VNGKDVGAEN PSIEKGAEPV QSNNDNVGNL PSRHQNDPQS  660
SRIEKDVPNP PVDPGGTESF QTDAANLRNP SFSNQTNVAR PSLAERNSTT RTFEWEESIN  720
TSQEGTKKDA GRLHLPSPKR TAVSPLKKHE DTRFSKRRKV KRWSLLEEDT LRTGVQKYGE  780
GSWSLILKSY SDIFKERTQV DLKDKWRNMK G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354826.10.0PREDICTED: uncharacterized protein LOC103945953
TrEMBLA0A498KE890.0A0A498KE89_MALDO; Uncharacterized protein
STRINGXP_009354826.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-15MYB_related family protein