PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013289.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 347aa    MW: 38389.4 Da    PI: 4.527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013289.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19122171154
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                  s y+GVr++k +g+W+AeIrd +     + +r++lg+f tae+A ka++a r+++e
  Pbr013289.1 122 SPYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTFNTAEDASKAYEAKRLEIE 171
                  68*******9.**********55.....45***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-17122170IPR016177DNA-binding domain
PROSITE profilePS5103219.177123184IPR001471AP2/ERF domain
SMARTSM003803.8E-17123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-22124171IPR001471AP2/ERF domain
CDDcd000184.11E-23124165No hitNo description
PRINTSPR003672.0E-10124135IPR001471AP2/ERF domain
PfamPF008474.4E-12124172IPR001471AP2/ERF domain
PRINTSPR003672.0E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MPEPQRQLVN QRNSMRKSKR ELFPAQQSKI TRKVRIICYD PDATDDSSSS EDEGGRKRSF  60
AKNPRRFVRE ITFCQPNVAL PPPKAAAEPE SSGQDSNYGG VKTLKPSNKK VKFTKSHRQS  120
SSPYRGVRQR KWGKWAAEIR DPFKGARIWL GTFNTAEDAS KAYEAKRLEI EEMVAAAPAA  180
VSASDKSNNT SASAVVSNNC SYNNAEPSED SDCVLSQRSP SSVLDLETSA SNNIQNGADL  240
EKEIADDSTN LGKLQIPDLG FLDDSLGPLH FDQDINLGPE LDSLYLEDFG QYFDDYSSIE  300
DIQIPGFESD EPSSLPDCDF EDLGKDDIAC WLDEPLKFSM PISFCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-15124164344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013289.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356703.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A498HKV90.0A0A498HKV9_MALDO; Uncharacterized protein
STRINGXP_009356703.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-31ERF family protein