PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013425.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 222aa    MW: 24924.3 Da    PI: 8.9723
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013425.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1972126256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F+++++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Pbr013425.1  72 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 126
                  78889************************************************98 PP
2HD-ZIP_I/II119.41.9e-3872160189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++ev+eLr+
  Pbr013425.1  72 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVKELRA 160
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1957129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1857122IPR009057Homeodomain-like
PROSITE profilePS5007117.08668128IPR001356Homeobox domain
SMARTSM003891.6E-1770132IPR001356Homeobox domain
CDDcd000868.92E-1771129No hitNo description
PfamPF000467.6E-1772126IPR001356Homeobox domain
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
SMARTSM003409.1E-22128171IPR003106Leucine zipper, homeobox-associated
PfamPF021836.7E-10128162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAVLPTAMAM GSSSLELTIS VPGFSSYPSF LNSSVRDLDI NQVPSLQGDQ EEWMTAGMED  60
EEESSNGSGP PRKKLRLTKE QSRLLEESFR QHHTLNPKQK EALAMQLKLR PRQVEVWFQN  120
RRARSKLKQT EMECEYLKRW FGSLTEQNRR LQREVKELRA MKVGPPTVLS PHSCDPLPAS  180
TLTMCPRCER VTTTTNFDRD TVSGPTKTNH ISAAAATTLS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013425.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357970.11e-164PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX12e-84HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-84HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A498I8H61e-128A0A498I8H6_MALDO; Mitogen-activated protein kinase
TrEMBLM5XG601e-133M5XG60_PRUPE; Uncharacterized protein
STRINGXP_009357949.11e-163(Pyrus x bretschneideri)
STRINGXP_009357970.11e-163(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-81homeobox-leucine zipper protein 17