PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013533.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27442.5 Da    PI: 4.9256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013533.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.7e-203788556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++f++eq+  Le+ Fe ++++  +++ +LA++lgL+ rqV +WFqNrRa++k
  Pbr013533.1 37 RRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 88
                 48*************************************************9 PP
2HD-ZIP_I/II120.49.6e-3936126393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd l+++ e+L++e+++L  +l++
  Pbr013533.1  36 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQMERDLRSLREDYDMLASRFESLKEEKQSLLMQLQK 126
                  69************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-192791IPR009057Homeodomain-like
SMARTSM003891.0E-182994IPR001356Homeobox domain
PROSITE profilePS5007117.2813090IPR001356Homeobox domain
CDDcd000861.50E-163791No hitNo description
PfamPF000463.4E-173788IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-203795IPR009057Homeodomain-like
PRINTSPR000313.4E-66170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000313.4E-67086IPR000047Helix-turn-helix motif
PfamPF021832.1E-1290130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MERRKEECYE EENLDYVSGL EPQFATKRKK NKGTNTRRFS DEQISLLESI FEADSKLEPR  60
RKVQLARELG LQPRQVAIWF QNRRARWKSK QMERDLRSLR EDYDMLASRF ESLKEEKQSL  120
LMQLQKLNDL VGTSRDGAPT EDSLVNQTVD GSSYKDGNCE TTAQVRLEEE LEQRGVIDSH  180
TSNDFGGEYG DERHDELPKI GPLDASATPQ ELHRLDSGSI LFDPSRCNLH WLNFWA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12637KRKKNKGTNTRR
28290RRARWKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351938.11e-175PREDICTED: homeobox-leucine zipper protein ATHB-7-like
TrEMBLA0A498KJ651e-165A0A498KJ65_MALDO; Uncharacterized protein
STRINGXP_009351938.11e-174(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-40homeobox 7