PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013714.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 304aa    MW: 34391.2 Da    PI: 9.0374
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013714.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-113179155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV    ++grW A+I++      + r++lg+f  +eeAak +  a +k++g
  Pbr013714.1 31 SRYKGVV-PQSNGRWGAQIYEK-----SHRVWLGTFNEEEEAAKTYNIALLKFRG 79
                 78****7.7779*********4.....6***********************9997 PP
2B3901.8e-28165266197
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kv tpsdv++++r+v+pk++ae+h       g    +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+ +  ++++
  Pbr013714.1 165 FEKVATPSDVGRLNRMVIPKQHAEKHfevhlsvG--FGKGVLLKFEDELGKVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDVVRFQKSVGEDKK 260
                  89************************88887652..237899************************************************55448888 PP

                  .EEEEE CS
           B3  92 lvvkvf 97 
                  l++  +
  Pbr013714.1 261 LFIECR 266
                  888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-143188IPR016177DNA-binding domain
CDDcd000181.10E-203186No hitNo description
PfamPF008471.5E-53179IPR001471AP2/ERF domain
SMARTSM003803.4E-183293IPR001471AP2/ERF domain
PROSITE profilePS5103218.3213287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-153288IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.9E-34158268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-27160263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-25164267No hitNo description
PROSITE profilePS5086313.281165269IPR003340B3 DNA binding domain
PfamPF023624.9E-26165267IPR003340B3 DNA binding domain
SMARTSM010192.1E-19165268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDLMSCWNAS TSDYSTMNGA NGASSNKLPS SRYKGVVPQS NGRWGAQIYE KSHRVWLGTF  60
NEEEEAAKTY NIALLKFRGL DAITHFSRSQ MKPYGPDVTE ALFLEYHSKA EIVDMLRKHS  120
YANELEMYKH KLHNGGALGL DDGGKRTKCY LDLMDTCSRD RELLFEKVAT PSDVGRLNRM  180
VIPKQHAEKH FEVHLSVGFG KGVLLKFEDE LGKVWRFGYC YWSSSQSYVL SKGWIRFVKE  240
KKLKAGDVVR FQKSVGEDKK LFIECRPRKV DVSGIEEMHG RVADPLATVQ DDGVVRLFGV  300
NIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4316227411126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013714.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349280.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
RefseqXP_009371008.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M54e-98RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A498H9V70.0A0A498H9V7_MALDO; Uncharacterized protein
STRINGXP_009349280.10.0(Pyrus x bretschneideri)
STRINGXP_009371008.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-100RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]