PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013924.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 222aa    MW: 24105.9 Da    PI: 4.7659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013924.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1858108155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  Pbr013924.1  58 PVFRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 108
                  579****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1458108IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2159118IPR016177DNA-binding domain
PROSITE profilePS5103222.19459116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-3259118IPR001471AP2/ERF domain
SMARTSM003805.1E-3159122IPR001471AP2/ERF domain
PRINTSPR003677.2E-96071IPR001471AP2/ERF domain
CDDcd000182.17E-3160118No hitNo description
PRINTSPR003677.2E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDGCSNYYVD PPGESSSASE TSSARPMFMT LSDEEVLLAS TCPKKRAGRK KFRETRHPVF  60
RGVRRRNSGK WVCEVREPNK KTRIWLGTFP TAEMAARAHD VAAIALRGRS ACVNFADSAR  120
RLPVPASSNA KDIQTAATEA AEAFRPTQES DEVCGASVAA PTESTSASEQ QQVFYMDEEA  180
VFGMPGLLAD MAEGMLLPPP HYSEDDDVDI CADVALWSFS D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14571151271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013924.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6226230.0HQ622623.1 Pyrus pyrifolia DREB protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371278.11e-164PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ939e-78DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLF6KUC41e-162F6KUC4_PYRPY; DREB protein
STRINGXP_009371278.11e-163(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-79C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]