PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013929.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 800aa    MW: 87823.9 Da    PI: 5.9564
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013929.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.82e-22202255155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kp+++W + LH +F+ a++++ G ++A+Pk+ile+m+v+gLt+++v+SHLQkYR+
  Pbr013929.1 202 KPKVVWINSLHYQFLLAIRHI-GLDRAVPKNILEFMNVPGLTRANVASHLQKYRI 255
                  79*******************.********************************6 PP
2DUF26075.97.2e-24733799369
       DUF260   3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 
                  a Ck+lrr+C++dC+++ yfp ++p++fa vh+++Gasnv+k+l++lp+  r +a+++l+yeAe+r+
  Pbr013929.1 733 ATCKYLRRRCPSDCIFSSYFPPNNPQRFASVHRIYGASNVSKMLQQLPDYLRAEAADTLCYEAECRI 799
                  78**************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.1E-3016131No hitNo description
SuperFamilySSF521725.83E-2823133IPR011006CheY-like superfamily
SMARTSM004481.3E-2524128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.97525132IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.7E-1926126IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.50E-2527129No hitNo description
SuperFamilySSF466892.87E-16199259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-23200259IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-22202255IPR006447Myb domain, plants
PROSITE profilePS5089117.446730799IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-24733799IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MDATDSAEFR QSSSNSKPSF ADTINILVVD DDATTLTIVS AMLKTWNYKD ALATLREQKG  60
AFDLVVTDLH MPEMDGFELQ KHVRDEFKLP VIMMSADDNE SVILKSLEGG VAYYIVKPVS  120
KDDIKNVWQY TVAAKKGKSV VIGEIEGAPR EAPGEVDDGS NSEISSDANE EQHKKKAEVK  180
TKKAKKRGRE DDNEERMVAP KKPKVVWINS LHYQFLLAIR HIGLDRAVPK NILEFMNVPG  240
LTRANVASHL QKYRIFLKRV AEKARLSKCL SDRVFRSSFA VGQPGLAFNS TEAGDQYSQY  300
LKLQQQMGAS PINASVFQPS SVGIDGNTIN LLGLIQCPNY QQSSRSSNTM RSVTQLIGSG  360
QSRLLNPITQ ANLLRHQPWV GNVNHQLLSQ ESRHPGDFGK QQLMNNHGSS GGMSSNSADI  420
FGLTTNNILA SNLIQMFPQV KQQGIFTNNN PFSYNFGTSG IQNNFTNQQL IGNFSGTHPN  480
CRSEILGKLN NLNGTGGLSS NGFNFNNEII NGLTNGVRNV SLSGSTAPMA TLGGSSSSSS  540
SAGFETSTTT SSAYQFLKVF NKNKEDQQQN VSVLPPPAEN NDNNSTTAPT LVNKNSMPPE  600
QELDKTLDDL MISNFFMDQH NNYQPSSSQQ KGGDQDQLPP DFSSFLYPVE VPETTPNQMN  660
PSAADQGLDT AVNKVSNPSA DQCLGTAVNK VSDTSADQQQ GGDQQDLNPE FRGNVFDPED  720
YNMLSETPLP FPATCKYLRR RCPSDCIFSS YFPPNNPQRF ASVHRIYGAS NVSKMLQQLP  780
DYLRAEAADT LCYEAECRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-227337991379LOB family transfactor Ramosa2.1
5ly0_B9e-227337991379LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013929.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506222.10.0PREDICTED: two-component response regulator ORR21-like
TrEMBLA0A498JHF80.0A0A498JHF8_MALDO; Uncharacterized protein
STRINGXP_009371337.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.19e-60response regulator 2