PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr014032.3

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 470aa MW: 53090.7 Da PI: 9.6444

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr014032.3	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	140	181	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l ++++q+ + + Ia ++ Rt +++k+r++k Pbr014032.3 140 WTKEETDQLFELCQQFDLR-FIVIADRFSSSRTVEELKERYYK 181 *****************.*****9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	9.3E-27	119	186	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.8E-6	134	183	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-6	136	185	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.65E-7	138	183	IPR009057	Homeodomain-like
CDD	cd11658	1.51E-17	140	182	No hit	No description
Pfam	PF05499	5.6E-7	327	389	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MDAKDILGLP KSTHPASQEK KSRPLKESQR KPDGISREVY ALTGGVPPLM PAVEPLQLKK 60 RPPTDEKITW QWLPFTSSAR KDNLQLYHWV IVVNGIPPTG DYSFAKYNKV QLSLIVLGKS 120 VDVVKYTDEE YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFSSSR TVEELKERYY 180 KVSRSILIAR AAAFPGNVSE HPIVKEPYKF TQERDRKRAL SMVLSPTKHQ ERKDYEVLAE 240 AKRIAESHMA ARNAKESELL VTFTMDSERA IVFGETLSPP SNSEFAPAMV AHSTSMAENA 300 STLVSLRMLR VYLRTYALDQ MIQAASSSAG LRTIKRVEQS LQELGVNLKP RVPTKAVCAQ 360 HLDLRKEILT LLNLQKQLQH KEAEGSSYRD GPYETPGTPK DRTFVPDSTS FGGEVLECTS 420 STVDLIYIHW MSGNRVGKRD QKRNALGRAE APSLPAQSKR PRKLRASDL*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MDAKDILGLP KSTHPASQEK KSRPLKESQR KPDGISREVY ALTGGVPPLM PAVEPLQLKK  60
RPPTDEKITW QWLPFTSSAR KDNLQLYHWV IVVNGIPPTG DYSFAKYNKV QLSLIVLGKS  120
VDVVKYTDEE YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFSSSR TVEELKERYY  180
KVSRSILIAR AAAFPGNVSE HPIVKEPYKF TQERDRKRAL SMVLSPTKHQ ERKDYEVLAE  240
AKRIAESHMA ARNAKESELL VTFTMDSERA IVFGETLSPP SNSEFAPAMV AHSTSMAENA  300
STLVSLRMLR VYLRTYALDQ MIQAASSSAG LRTIKRVEQS LQELGVNLKP RVPTKAVCAQ  360
HLDLRKEILT LLNLQKQLQH KEAEGSSYRD GPYETPGTPK DRTFVPDSTS FGGEVLECTS  420
STVDLIYIHW MSGNRVGKRD QKRNALGRAE APSLPAQSKR PRKLRASDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-18	101	196	4	91	DNA methyltransferase 1-associated protein 1
4iej_A	2e-18	101	196	4	91	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr014032.3

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009371392.1	0.0	PREDICTED: SWR1-complex protein 4-like isoform X1
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A498HW28	0.0	A0A498HW28_MALDO; Uncharacterized protein
STRING	XP_009371392.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]