PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014330.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 83aa    MW: 9332.41 Da    PI: 9.0186
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014330.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101659344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   + + +a +++ ++   +W ++ar +g g++++++k ++
      Pbr014330.1 16 SWTPKQNKEFEKALALHDKDtpdRWQKVARAVG-GKSAEEVKRHY 59
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7231267IPR017884SANT domain
SMARTSM007172.2E-81365IPR001005SANT/Myb domain
SuperFamilySSF466895.55E-131571IPR009057Homeodomain-like
PfamPF002492.3E-81659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-51669IPR009057Homeodomain-like
CDDcd001672.04E-61759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MMASNSLTSS RSSSSSWTPK QNKEFEKALA LHDKDTPDRW QKVARAVGGK SAEEVKRHYE  60
ILIEDVKHIE SGRVPFPDYR GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33780174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014330.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371617.13e-55PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A315A6X61e-47A0A315A6X6_PRUYE; Protein RADIALIS-like 4
STRINGXP_009371617.11e-54(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-32RAD-like 1