PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014479.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 286aa    MW: 32569.4 Da    PI: 5.4007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014479.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
      Pbr014479.1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding48.71.7e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+   ++++  lG++ W++Ia++++ gRt++++k++w++
      Pbr014479.1  67 RGAFTEAEENEMIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.517961IPR017930Myb domain
SuperFamilySSF466897.86E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002496.5E-111461IPR001005SANT/Myb domain
CDDcd001671.61E-41661No hitNo description
PROSITE profilePS5129425.03562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-2565117IPR009057Homeodomain-like
SMARTSM007172.0E-1366114IPR001005SANT/Myb domain
PfamPF002497.5E-1467110IPR001005SANT/Myb domain
CDDcd001672.40E-969110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEAEENEMIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKHLG  120
VDPLTHKPIE EKESTEENKE TITLHTNITS SSSEEGLHES QSNGLEAKLL QDSYGNEGFP  180
ESDEKLQNEL QLAPLDDTND ILKNYEVFCG SLDLGTLMLN QGITNTSSMS NSYSTSSFSI  240
EDSNNASISI GESRQENCRQ HWVDTVDSML SWDGFNNLEQ DLFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371720.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A498HI610.0A0A498HI61_MALDO; Uncharacterized protein
STRINGXP_009371720.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.16e-84myb domain protein 40