PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014581.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 176aa    MW: 19107.7 Da    PI: 8.3833
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014581.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.92.8e-46151141100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal++
  Pbr014581.1  15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQ 112
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Pbr014581.1 113 AE 114
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0414115IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4515112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKENGSSRKQ GAPSPCAACK LLRRRCAQDC VFAPYFPADE PQKFANVHKV FGASNVNKML  60
QELPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDVLQTQLAL AQAEVVHLKV  120
RQTASFSNHG LSPASPSNSR SPSSKFMGSQ ARPIFDMDMM VDHTSLGMGE SMWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-50111167112LOB family transfactor Ramosa2.1
5ly0_B1e-50111167112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014581.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371914.11e-129PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE94e-79LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A498JUR41e-126A0A498JUR4_MALDO; Uncharacterized protein
STRINGXP_009371914.11e-129(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-81LOB domain-containing protein 4