PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr014583.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 231aa MW: 26201.1 Da PI: 9.4745

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr014583.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	72	91	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Pbr014583.1 72 FACSICSKTFNRYNNMQMHM 91 78*****************9 PP
2	zf-C2H2	12	0.00063	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ Pbr014583.1 156 FMCRKCAKTFAVKGDWRTHEKNC 178 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.38E-6	63	95	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.4E-6	72	91	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.17	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.741	72	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	119	151	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.08E-5	142	176	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.4E-5	142	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	78	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEKVTVALHI GLPNSTSSTG DKSETYDENK KVLNLKEEQV VMKKSIHGCS FKAESRFWIP 60 TPAQVLVGPM QFACSICSKT FNRYNNMQMH MWGHGSEYRK GPDSLKGTQP AAMLRLPCYC 120 CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK CAKTFAVKGD WRTHEKNCGK 180 LWYCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFHEDE KECVTGSEEE *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr014583.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364303.1	1e-174	PREDICTED: zinc finger protein WIP3-like
Refseq	XP_009371915.1	1e-174	PREDICTED: zinc finger protein WIP3-like
Swissprot	Q9SGD1	1e-116	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A498K926	1e-171	A0A498K926_MALDO; Uncharacterized protein
STRING	XP_009364303.1	1e-174	(Pyrus x bretschneideri)
STRING	XP_009371915.1	1e-174	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-118	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]