PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014650.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 160aa    MW: 17891.6 Da    PI: 7.0443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014650.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.3e-2255113257
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 
                  dDg +WrKYGqK+++++++pr+ +rCt++   gC+++k++++ ++ p+v+ +tY g+H+
  Pbr014650.1  55 DDGRAWRKYGQKVIHNAKHPRNHFRCTHKfdqGCKATKHIQQVQDHPSVLRTTYYGTHT 113
                  8***************************9999**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2339114IPR003657WRKY domain
SuperFamilySSF1182902.22E-2247114IPR003657WRKY domain
PROSITE profilePS5081119.86449117IPR003657WRKY domain
SMARTSM007743.2E-2854119IPR003657WRKY domain
PfamPF031062.0E-2155113IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVCCESGSSS DPLCEDPGDS SISCKSTSTF KDGRGSYKRR KTTHSWTTDT PDLIDDGRAW  60
RKYGQKVIHN AKHPRNHFRC THKFDQGCKA TKHIQQVQDH PSVLRTTYYG THTLTSHDNH  120
WLPSDYLVSP DDLMAFKSSG PVSGFSSSID QYDGDDDVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-2054113867OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945727.16e-59probable WRKY transcription factor 70
SwissprotK4BIZ95e-26WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A498IG342e-58A0A498IG34_MALDO; Uncharacterized protein
STRINGXP_008359948.13e-57(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-27WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]