PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014767.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 202aa    MW: 21895.1 Da    PI: 10.1309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014767.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.61.8e-17553150
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50
                 +ppGfrFhPt+eelv +yLk+k+++ +++l +vi ++d+yk+ePwd++++
  Pbr014767.2  5 VPPGFRFHPTEEELVGYYLKRKINSLHIDL-DVIVDIDLYKIEPWDIQHA 53
                 69****************************.99**************842 PP
2GATA22.22e-0764791833
         GATA 18 gnktLCnaCGlyyrkk 33
                    +LCnaCG++yrkk
  Pbr014767.2 64 SAASLCNACGIRYRKK 79
                 4567**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-18354IPR003441NAC domain
PROSITE profilePS5100512.7195158IPR003441NAC domain
PfamPF023651.3E-8650IPR003441NAC domain
Gene3DG3DSA:3.30.50.104.1E-46379IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESCVPPGFR FHPTEEELVG YYLKRKINSL HIDLDVIVDI DLYKIEPWDI QHASAAAARN  60
TDASAASLCN ACGIRYRKKI PTVSLCKGPK RWKKDKPYGS STTSTITTPA TTNTAASASA  120
SATTTTTSTT ARKAKIGGRG GRTDLSESLQ VKLVAFGKDV CLQGTPPVQK KRRYQKRRRE  180
MGEVEQAAVC LLAMSSHSVF G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014767.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700681e-103KC770068.1 Pyrus pyrifolia microsatellite TXY181 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352157.12e-93PREDICTED: uncharacterized protein LOC103943571
TrEMBLA0A498IG799e-41A0A498IG79_MALDO; Uncharacterized protein
STRINGXP_009352156.11e-100(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-17vascular related NAC-domain protein 7