PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015502.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 278aa    MW: 29862.9 Da    PI: 4.991
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015502.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1865115155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Pbr015502.1  65 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 115
                  68*****998.**********854...59*********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1265115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3166123IPR001471AP2/ERF domain
SMARTSM003801.0E-3466129IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2166123IPR016177DNA-binding domain
PROSITE profilePS5103223.01166123IPR001471AP2/ERF domain
CDDcd000186.80E-3067123No hitNo description
PRINTSPR003674.8E-106778IPR001471AP2/ERF domain
PRINTSPR003674.8E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MADPTHSENE SSFNSSSPSP TSPSSSGFSQ SIPNSGLNQL PVRSDSPGPD QKRAKRARET  60
SSKHPVYRGV RMRTWGKWVS EIREPRKKNR IWLGTFSTPE MAARAHDVAA LTIKGNSAIL  120
NFPGLAGSLP RPDSNSPRDI QAAAAKAASM ETLNPPPLPP PLHSSSSSSA LSQSSSSSSM  180
VGTSTSGDAG TPEELGEIVE LPSLGTSYES AESGSEFVFA DSVEGWLYPP PWWHNSYLEE  240
EYGYNNLINS IIRDDQMLMS EPPAAECVGV EAFLWQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1957123572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324630.0GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352529.10.0PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD38e-66DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A498HV171e-148A0A498HV17_MALDO; Uncharacterized protein
STRINGXP_009352529.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-67ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]