PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015557.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 246aa    MW: 26902.1 Da    PI: 6.2659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015557.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+++ +++G+g +W + + + g++R++k+c++rw++yl
      Pbr015557.1 14 KGPWSPEEDTTLKNYLHKHGSGgNWIALPTKAGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.661966IPR017930Myb domain
SuperFamilySSF466891.06E-2011103IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002498.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001674.88E-91662No hitNo description
SMARTSM007170.8367109IPR001005SANT/Myb domain
PROSITE profilePS512947.95967111IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-1370111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRAPCCDKS RVKKGPWSPE EDTTLKNYLH KHGSGGNWIA LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGG FTEGEDKVIC TLYGTIGTSQ LPGRTDNDIK NYWNTKLKKK LLATNNMNTV  120
DTNLSQFSDS IPKTETLHDQ GTPSCFDGTL PYLKDVSSGQ SFDPCTQISP SNPMEVNGFE  180
TREGKSFSII SPSQEVSSLP TSSGLGLENN YSIWSGNEGV DNVSGVLMPF GFEPPNDDLL  240
DGFGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-19141117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015557.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337621.21e-171transcription factor MYB36-like
SwissprotQ9FKL23e-60MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A498HVJ01e-129A0A498HVJ0_MALDO; Uncharacterized protein
STRINGXP_009352589.11e-178(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-56myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]