PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015587.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 320aa    MW: 34900.2 Da    PI: 10.263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015587.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13130174347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
      Pbr015587.1 130 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 174
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.284123179IPR017930Myb domain
SuperFamilySSF466891.2E-17124180IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-18126178IPR006447Myb domain, plants
SMARTSM007172.8E-9127177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-11127173IPR009057Homeodomain-like
CDDcd001671.46E-8130175No hitNo description
PfamPF002491.1E-10130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRKCSHCGN VGHNSRTCTN FRGTLSSTSF VGFRLFGVQL QHDHHHVVMS SSNMNSNSAN  60
HHVAMSMKKS FSTDCLPTTS SASSSSPSNS SLSPSRLSMD ENICAADKAS IGYLSDGLIC  120
RAQERKKGVP WTEEEHRTFL IGLEKLGKGD WRGISRNYVT TRTPTQVASH AQKYFLRQAS  180
LTKKKRRSSL FDMFGSSNNI NMATYDPIPT QRDNIIHGDM AIDTSTLPPL QRSTAAKNLK  240
SDHNQKPQSS RTTTQQLPAW IYGLIDSQMK SSSSSSEAPV VPDLELTLAA PTSPNLEQKK  300
RSSPTPAGPL LNLGRISVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352631.10.0PREDICTED: myb-like protein J
TrEMBLA0A498HTD90.0A0A498HTD9_MALDO; Uncharacterized protein
STRINGXP_009352631.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.19e-57MYB_related family protein