PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015599.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 395aa    MW: 42864.4 Da    PI: 8.399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015599.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.64.6e-10211235126
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaC 26 
                  Cs C+ttkTplWR+gp+g+k   +aC
  Pbr015599.1 211 CSDCNTTKTPLWRSGPRGPK-EGKAC 235
                  *******************9.66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-4205244IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-5205235No hitNo description
Gene3DG3DSA:3.30.50.108.3E-7209229IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.462209235IPR000679Zinc finger, GATA-type
PfamPF003202.3E-7211235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAPPPYHNLS PPSPFTLELS GDHHGDHDLQ YHHLFNLEPQ ASFFSSSSLS SPLFLTPAQV  60
QGPSDDHYRE PHQFQFQLLE ADHNIVPHGG SHDHDHEAIE NEGGNGTVLK LSISKNGAVG  120
NGNPGTDHET STSSVKWMSS KMRMMRKMSN PDQTSSSSTS SDDKPISMKL SSHKFEEQKL  180
QHPSSQLGAD MISCSNNSSN NMNNVPIIRV CSDCNTTKTP LWRSGPRGPK EGKACDGGSR  240
SXXXXXXXXX XXXXXAPPPP PAAASGTTLT VAAPSMKSSK VQPKDNKSRI SSTVPFKKRP  300
YNKLSSSPSS RGKSKKLCFE DFTISMKNNS SSGNPTAATT TTAXXXXXXX XXXXXXXXXX  360
XXXXXXXALQ RVFPQDEKEA AILLMALSCG LVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015599.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352651.10.0PREDICTED: GATA transcription factor 21-like isoform X3
TrEMBLD9ZIZ20.0D9ZIZ2_MALDO; GATA domain class transcription factor
STRINGXP_009352651.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-11cytokinin-responsive gata factor 1