PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015697.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 338aa    MW: 37214.4 Da    PI: 5.5229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015697.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-19187237255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  Pbr015697.1 187 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAFRIRG 237
                  8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-31186246IPR001471AP2/ERF domain
CDDcd000185.25E-33186246No hitNo description
SMARTSM003802.6E-37187251IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23187247IPR016177DNA-binding domain
PROSITE profilePS5103224.302187245IPR001471AP2/ERF domain
PfamPF008472.9E-14187237IPR001471AP2/ERF domain
PRINTSPR003672.1E-10188199IPR001471AP2/ERF domain
PRINTSPR003672.1E-10211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEEQPQHYTS CCSLTVNNIS SPCMMPCLTQ QWGDLPFQVD NSEDMIAYNS VHDALSLGWS  60
PDHTLPFQVD DWDDMIDYNS LHDALSXXXX XXXXXXXLLA SDGLPTTPWN LPPDVSTQSQ  120
HHDFNVSING NEPSPTLVLP PDTDIPPLDH DDRDQNQVQV GDAVAEQDGV NVNVPKLQKS  180
GVARGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTYET SEEAALAYDR AAFRIRGSKA  240
LLNFPHRIGL NEPPPVRVTG KRKEPEQEAA ASSSTFSSSS SSSSSSSATP TAATKRTKLD  300
KSVSSSADHD HQANMRHKRQ KNNTLYLLPL GEQLLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-38183252170ATERF1
3gcc_A3e-38183252170ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015697.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1288570.0KC128857.1 Malus x domestica cultivar Taishanzaoxia ethylene response factor (ERF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372828.10.0PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A4D5XF430.0A0A4D5XF43_9ROSA; Ethylene Responsive Factor ERF2
STRINGXP_009372828.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-41ethylene responsive element binding factor 2