PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015698.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 310aa    MW: 34257.2 Da    PI: 6.1862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015698.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20142192255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka++ a+ +l+g
  Pbr015698.1 142 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAVEAAKAYDVAAFNLRG 192
                  7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32141201IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22142201IPR016177DNA-binding domain
PfamPF008477.1E-14142192IPR001471AP2/ERF domain
PROSITE profilePS5103224.671142200IPR001471AP2/ERF domain
CDDcd000181.13E-29142200No hitNo description
SMARTSM003803.9E-37142206IPR001471AP2/ERF domain
PRINTSPR003671.6E-10143154IPR001471AP2/ERF domain
PRINTSPR003671.6E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASEASALEL IRQHLLNEFT TMDSFIASLD LCTSVPQQDE IAQSPFNTTS SSSSTTTNGG  60
SESTDQYFKI SDYLVPEIDQ DTEFETKPQI SHPKPPKHST LSHRKPPINV AIPSPPPLSS  120
SSADEDHNTS NTSTMVEAAA RHYRGVRRRP WGKYAAEIRD PNRRGSRVWL GTFDTAVEAA  180
KAYDVAAFNL RGSKAILNFP LEAGRSAELP ADHPLLASRK RRREHSTEIH ENSGEMIRNK  240
EIKKEEDVQE MKSSAQERVS TAVCPLTPSS WAAVWDMSKE NEQGIFSVPP LSPLSPHPNF  300
MGYPPLMVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27138201164ATERF1
3gcc_A1e-27138201164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218222RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324280.0GU732428.1 Malus x domestica AP2 domain class transcription factor (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372829.10.0PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLD5L0Y80.0D5L0Y8_MALDO; AP2 domain class transcription factor
STRINGXP_009372829.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-45ERF family protein