PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr015817.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 230aa MW: 25571.5 Da PI: 9.1209

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr015817.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184	5.9e-57	15	158	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 +++CqdCGnq+kk+C+++RCRtCCk +gf+C+th kstWvp+++rr+ +qql ++ ++ ++ ++ ++ ++r+ +a+ + ++ ++s ++ + Pbr015817.1 15 GSRCQDCGNQSKKECVYMRCRTCCKGKGFHCQTHFKSTWVPVYRRRHAhHQQLPSTDPQHPTHLHQGHNYNPRR------TAAGHVIINPSSSGQNQH 106 679*****************************************9734455555555555555555555554......566667777777888899 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++P+ev+s+a frcvrv+s++d ++ aYqt++ igGhvfkGiLydqG++ Pbr015817.1 107 VNNFPAEVNSMANFRCVRVRSMEDTVDQQAYQTSMVIGGHVFKGILYDQGPD 158 9***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.5E-53	15	158	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.5E-26	18	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-21	110	157	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVRQGRGGRE EEIMGSRCQD CGNQSKKECV YMRCRTCCKG KGFHCQTHFK STWVPVYRRR 60 HAHHQQLPST DPQHPTHLHQ GHNYNPRRTA AGHVIINPSS SGQNQHVNNF PAEVNSMANF 120 RCVRVRSMED TVDQQAYQTS MVIGGHVFKG ILYDQGPDYT TATGRSSSSQ HVMNKQTSNF 180 VNAAASASNI TASTSSAAAD QEVPHHHQLP SSYPLIPFNA FMPGTQFFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr015817.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009373006.1	1e-174	PREDICTED: protein SHI RELATED SEQUENCE 3
TrEMBL	A0A498IYR1	1e-160	A0A498IYR1_MALDO; Uncharacterized protein
STRING	XP_009373006.1	1e-173	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	9e-49	SHI-related sequence3