PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015835.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 186aa    MW: 21332 Da    PI: 9.3085
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015835.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.16.4e-14456149
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk 49
                 lppG+rF Pt+eel+++yL++k++g++      l+++i+ + iy+++Pw+Lp+
  Pbr015835.1  4 LPPGYRFYPTEEELISFYLQNKLDGRSeelnRVLDRIIPVIYIYEFNPWKLPR 56
                 79************************966532233469999**********94 PP
2NAM31.74.5e-10689996127
          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                   ++ +g k+t+ fy g+ap+g+kt+W+m+ey+
  Pbr015835.1  68 YNRPIGHKRTMGFYIGSAPRGKKTEWMMNEYK 99 
                  45679**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.051142IPR003441NAC domain
SuperFamilySSF1019419.15E-263107IPR003441NAC domain
PfamPF023652.1E-13599IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEDLPPGYRF YPTEEELISF YLQNKLDGRS EELNRVLDRI IPVIYIYEFN PWKLPRSPST  60
VYSSNSNYNR PIGHKRTMGF YIGSAPRGKK TEWMMNEYKA IEEHADHDNQ LSMAASSSIA  120
RTSTPSAPTL RQEFSLCPVH RKSKSLRAFD RLHPGIEITR NPSFNIASNS CSRCKSSRST  180
FDNDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-15410217144NO APICAL MERISTEM PROTEIN
1ut4_B4e-15410217144NO APICAL MERISTEM PROTEIN
1ut7_A4e-15410217144NO APICAL MERISTEM PROTEIN
1ut7_B4e-15410217144NO APICAL MERISTEM PROTEIN
3swm_A5e-15410220147NAC domain-containing protein 19
3swm_B5e-15410220147NAC domain-containing protein 19
3swm_C5e-15410220147NAC domain-containing protein 19
3swm_D5e-15410220147NAC domain-containing protein 19
3swp_A5e-15410220147NAC domain-containing protein 19
3swp_B5e-15410220147NAC domain-containing protein 19
3swp_C5e-15410220147NAC domain-containing protein 19
3swp_D5e-15410220147NAC domain-containing protein 19
4dul_A4e-15410217144NAC domain-containing protein 19
4dul_B4e-15410217144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015835.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366767.11e-82PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A498HY672e-81A0A498HY67_MALDO; Uncharacterized protein
STRINGXP_009366767.15e-82(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-32NAC domain containing protein 90