PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015926.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 497aa    MW: 56251 Da    PI: 4.7283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015926.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.8e-1670130155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr++  +g+WvAeIr+p     g     k+ r +lg+  ta+eAa a+++a+++++g
  Pbr015926.1  70 CVFRGVRQRT-WGKWVAEIREPIRarAGsvpqkKNMRLWLGTLPTAYEAALAYDKAARAMYG 130
                  689****999.**********65556448**8555************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1070130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2671140IPR001471AP2/ERF domain
SMARTSM003801.5E-3071144IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1671140IPR016177DNA-binding domain
PROSITE profilePS5103221.10171138IPR001471AP2/ERF domain
CDDcd000182.44E-2672140No hitNo description
PRINTSPR003673.2E-107283IPR001471AP2/ERF domain
PRINTSPR003673.2E-10120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MESEASGGER KLRKRRNGCD SIEDTLAKWK NYNERLDFGK DVGKKTRRTP AKGSRKGCMR  60
GKGGPENSDC VFRGVRQRTW GKWVAEIREP IRARAGSVPQ KKNMRLWLGT LPTAYEAALA  120
YDKAARAMYG ALARLNFPDN AVDSKDYYSN SVSSKTPSSH ESSLTYNNAD EAEGRPAFFE  180
DCVAKEQKQE TDCSVSEELL VLRATSREPK VVKCEYETER ELVKNDDVFQ TGSYGSFDHW  240
GDYLPNEPPV VNFDPVFDRK PCNDLDALEI LLRSNYDYLT EVVDGECKRR NSCKPSNDVK  300
VETPAMREAA EKPFPVILES GSHNGLDEKY NYMHGEQINA AENHVTNFEP SEDVEMKLSM  360
TDQELQGGFA ETTRLNGHNH DDFIHSYACL DDLDVAYSPI YGINPWNDIG MQKELDDRLD  420
YVHNWPAEET YDIDAAEDQQ WGRTHNLPTQ LQTQPHLDIP GSSNHAEYAR LGVDFDSVLF  480
RQSYDSGEME DQGPPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1572138360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015926.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698190.0JQ669819.1 Malus x domestica dehydration-responsive element-binding protein (DREB2) (DREB2-4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373085.10.0PREDICTED: uncharacterized protein LOC103962141
TrEMBLI1Z6760.0I1Z676_MALDO; Dehydration-responsive element-binding protein (DREB2) (Fragment)
STRINGXP_009373085.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-28ERF family protein