PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015939.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 521aa    MW: 57798.1 Da    PI: 7.5965
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015939.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.3e-33221278260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d+++++i+Y+g+Hnh+k
  Pbr015939.1 221 DDGFNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITQIVYKGSHNHPK 278
                  8****************************************.***************85 PP
2WRKY105.62.6e-33385443159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d ++v++tYeg+Hnh+
  Pbr015939.1 385 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASHDARAVITTYEGKHNHD 443
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28213279IPR003657WRKY domain
PROSITE profilePS5081123.847215279IPR003657WRKY domain
SuperFamilySSF1182903.92E-25218279IPR003657WRKY domain
SMARTSM007742.8E-36220278IPR003657WRKY domain
PfamPF031062.4E-25221277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37370445IPR003657WRKY domain
SuperFamilySSF1182902.62E-29377445IPR003657WRKY domain
PROSITE profilePS5081138.744380445IPR003657WRKY domain
SMARTSM007742.8E-39385444IPR003657WRKY domain
PfamPF031069.9E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MTSSFTNLLT SNMENNGIGQ DRTNWGGQFS DYSSNPNRFT DRNGTEIPKF RSLQPPSLPL  60
SPPPVSPSSY LASTPAFSPT DFLSSSMFLS SSNNLESPTT GAFSSQVFDW MNNTKDTQQV  120
IRESESKMFS DFSFQPESRP ATNLQSSSSM VSVEEPFKRE RQAWDFSTTR QADSSAEKTA  180
VKSEFEPMEA NTQSNGLNGA PKSDYLHSTQ SSQYAREQKS DDGFNWRKYG QKQVKGSENP  240
RSYYKCTFPN CPTKKKVERS LDGQITQIVY KGSHNHPKPQ STRRSSSNLI QGSSYVISDQ  300
SVPTLSNPKV ESITLQEESS TSMGEDEFEQ NSPISNSGGA EDENEPEAKR WKGENANDQA  360
YASSGSRIVK EPRIVVQTTS EIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSVGCPVRK  420
HVERASHDAR AVITTYEGKH NHDVPAARGS SNNSNASRPA ADNSSNNVSM AVRPLALPNH  480
SNLRYLNSLQ NTRQPATTES QPPYTLKMLQ SEGSYGFSEF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38221446878Probable WRKY transcription factor 4
2lex_A8e-38221446878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015939.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373102.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6IEQ71e-117WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLD9ZJG30.0D9ZJG3_MALDO; WRKY domain class transcription factor
STRINGXP_009373102.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-110WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]