PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016125.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 398aa MW: 45503.7 Da PI: 9.7617

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016125.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	2e-31	81	134	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+v gL+++hvkSHLQ+YR+ Pbr016125.1 81 PRLRWTPQLHLSFVHAVERLGGQDRATPKLVLQLMNVRGLSISHVKSHLQMYRS 134 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.724	77	137	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-29	77	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-14	79	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-23	81	136	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	82	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDEPEFGYQE AEKSNEISEE QVENGSVGSS QKFSSFDLNE EASSDNEERG QGNKAADNDI 60 SSGGNEGQRV KVRQYVRSKM PRLRWTPQLH LSFVHAVERL GGQDRATPKL VLQLMNVRGL 120 SISHVKSHLQ MYRSKKLDGN GQVLSENHES KHGRDYISCM VHQTINQPRR HVYFRMDNGG 180 IVVATNPHDC HSQSQPDFKA SSRSSSLLNK EVAKGNNSNK SIDSILQTVP INPSKFPEEK 240 RWPPFETTNK QQWRPKRIPA AKINWLDNRN GSQSDHLMHH MHTTPRLIGE SHNLRPPNWH 300 LGESRNVRQF PSNAHNSITN SSCYKTEFKS PFRFELNAEK ISKYKEWMPQ LELGLGQRVE 360 NYEEKKITSR HRMVSEDHYG TGQRVKQEIS TKLALSL*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDEPEFGYQE AEKSNEISEE QVENGSVGSS QKFSSFDLNE EASSDNEERG QGNKAADNDI  60
SSGGNEGQRV KVRQYVRSKM PRLRWTPQLH LSFVHAVERL GGQDRATPKL VLQLMNVRGL  120
SISHVKSHLQ MYRSKKLDGN GQVLSENHES KHGRDYISCM VHQTINQPRR HVYFRMDNGG  180
IVVATNPHDC HSQSQPDFKA SSRSSSLLNK EVAKGNNSNK SIDSILQTVP INPSKFPEEK  240
RWPPFETTNK QQWRPKRIPA AKINWLDNRN GSQSDHLMHH MHTTPRLIGE SHNLRPPNWH  300
LGESRNVRQF PSNAHNSITN SSCYKTEFKS PFRFELNAEK ISKYKEWMPQ LELGLGQRVE  360
NYEEKKITSR HRMVSEDHYG TGQRVKQEIS TKLALSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016125.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352761.1	0.0	PREDICTED: two-component response regulator ORR24-like
Refseq	XP_009352762.1	0.0	PREDICTED: two-component response regulator ORR24-like
Refseq	XP_009352763.1	0.0	PREDICTED: two-component response regulator ORR24-like
TrEMBL	A0A498ISW7	0.0	A0A498ISW7_MALDO; Uncharacterized protein
STRING	XP_009352761.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-35	G2-like family protein