PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016172.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 218aa    MW: 24708.3 Da    PI: 8.7621
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016172.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.71.8e-33341353101
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg.........k 89 
                  ++kdr s ++T++g+RdRR Rls ++a++f+d+qd+LG+d++sk+i+WL++++k+ai +l g++++ +   +c++++   ++ ++++g         +
  Pbr016172.1  34 ARKDRRSNVYTSKGPRDRRFRLSPHTAIQFYDVQDRLGHDRPSKAIDWLIEKSKAAIEALSGSEQPCQyyYDCTNSNVLGQQTEQEIGeqskhqfwnH 131
                  79*************************************************************88888665553333333333333332222233431 PP

          TCP  90 aaksaakskksq 101
                           +s+
  Pbr016172.1 132 --------PESN 135
                  ........2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2834133IPR005333Transcription factor, TCP
PROSITE profilePS5136928.7053593IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MATSKSAFKQ QQVDNTRYGK IVRVQGRHIV RSMARKDRRS NVYTSKGPRD RRFRLSPHTA  60
IQFYDVQDRL GHDRPSKAID WLIEKSKAAI EALSGSEQPC QYYYDCTNSN VLGQQTEQEI  120
GEQSKHQFWN HPESNRELGT MSNGSPMNNV NNFKEPVFDP HQLSSLNYAE QALDPTSSLS  180
DSKVTEMGWF QSLVAWNYNA GDGGKICPYN SSHVSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-184093154Putative transcription factor PCF6
5zkt_B8e-184093154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016172.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352957.11e-165PREDICTED: transcription factor TCP4-like
TrEMBLA0A498ISM71e-145A0A498ISM7_MALDO; Uncharacterized protein
STRINGXP_009352957.11e-164(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-36TCP domain protein 10