PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016184.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 268aa    MW: 29707.4 Da    PI: 5.6883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016184.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19132182255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd    + k +r++lg+f taeeAa a+++a+++++g
  Pbr016184.1 132 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFKTAEEAALAYDKAALRIRG 182
                  8********.**********32..2.24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-30131190No hitNo description
Gene3DG3DSA:3.30.730.107.0E-32131191IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-23132192IPR016177DNA-binding domain
SMARTSM003809.1E-38132196IPR001471AP2/ERF domain
PROSITE profilePS5103223.551132190IPR001471AP2/ERF domain
PfamPF008471.0E-13132182IPR001471AP2/ERF domain
PRINTSPR003676.4E-11133144IPR001471AP2/ERF domain
PRINTSPR003676.4E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTVHSDIHAE KPASVDIHAE KPASEAIVLE NVWASFIGVD GPKNATELSQ SWEDMPPLDG  60
REGSMEVLQR LPSLGRWISM GTEAWEELLD SVVGPAQNTE QSCNDKLEGN GATNSECEAK  120
VERAKKVEIV KHYRGVRRRP WGKYAAEIRD STRKGARVWL GTFKTAEEAA LAYDKAALRI  180
RGSKAHLNFP LETVAKAMGL DCFSISSSSI GSNPRKRGLS DWEENVEERK PAVKRKASIH  240
KMCDHEFDVF EFQDLGSDYL DSLLSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-29131193466ATERF1
3gcc_A9e-29131193466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065820.0KM506582.1 Eriobotrya japonica transcription factor ERF16 (ERF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352826.10.0PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A498IVK90.0A0A498IVK9_MALDO; Uncharacterized protein
STRINGXP_009352826.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-36ERF family protein