PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016211.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 1768aa MW: 198893 Da PI: 5.2047

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016211.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	30	85	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL+++lgL++rq ++WF+ rR k+kk Pbr016211.1 30 PKRQMKTPFQLETLEKAYALDTYPSEAVRAELSERLGLSDRQLQMWFCHRRLKDKK 85 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-18	8	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-17	16	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.844	26	86	IPR001356	Homeobox domain
SMART	SM00389	2.7E-18	28	90	IPR001356	Homeobox domain
Pfam	PF00046	5.6E-16	30	85	IPR001356	Homeobox domain
CDD	cd00086	2.28E-14	31	86	No hit	No description
PROSITE profile	PS50827	16.96	544	603	IPR018501	DDT domain
SMART	SM00571	1.8E-22	544	603	IPR018501	DDT domain
Pfam	PF02791	3.3E-17	546	600	IPR018501	DDT domain
Pfam	PF05066	2.7E-15	725	793	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.3E-5	944	988	IPR028942	WHIM1 domain
Pfam	PF15613	6.6E-13	1127	1199	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1768 aa Download sequence Send to blast
MEAASEGENQ NKNHESNSKF NNSSEGQSKP KRQMKTPFQL ETLEKAYALD TYPSEAVRAE 60 LSERLGLSDR QLQMWFCHRR LKDKKEGGPP KKQRKLAPAL PEPPMDDLAH GSEPGSDYGS 120 GSGSGSSPFG HAQLRNVVAR GVADDIPMRG RRYYESPQSK LELRAIACVE AQLGEPLREN 180 GPLLGIEFDP LPPDAFGAPI VAEQLKRSAH ALEGKYERHD AKPNKVAPRT LHEYPFPQDH 240 SSIRSDAYGQ VSQSHFHDSA IDGPSARTSS FAVGNEPLSR VHVVHGHASR VRLLSQQERQ 300 AVPYSSPVDD GSVPQRDSFT NVRVNTQFSD PPVVAPENSN VLSEDQINDS ILRMERKRKS 360 EEARIAKEVE AHELRIRKEL EKQDILRRKN EERMRKEMER QDRERRKEEE RLMRERQREE 420 ERLKREQKRE IERREKFLQK EYIRAEKRRQ KEELRKEREV VRRKAALEKA TARRLAKESM 480 ELIEDEQLEL MELAAASKGL SSIISIDLDT LQNLDAFRDS LVAFPPRSVQ LKRPFAIQPW 540 INSEANIGNL LMVWRFLITF ADVLELWPFT LDEFIQAFHD YDSRLLGEIH VALLRLIIKD 600 IEDVARTPTG LGINQNGAAN PGGGHPQIVE GAYAWGFDIR NWQQHLNLLT WPEIFRQLAL 660 SAGFGPQLKK RSIAWSYTPD KDEGKVCQDA ISNLRNGSAA VNAFAVMQEK GLLAPRRSRH 720 RLTPGTVKFA AFHVLSLEGN KGLTVLDLAE KIQKSGLRDL TTSKTPEASI SVALTRDTKL 780 FERIAPSTYR VRAAYRKDPI DAEAVLSAAR KKIQIFENGI LAAEDVDDVE RDDVENDEVE 840 RDEDFECEVD EDPDVDDLAT PSVAKKSPDD YSEVISFSEN GKDSLCGDVG LAVKNEFDKD 900 VSCSPVTGSK DAFCPSASSK QCVSGVDISN SNLDQENMEI DESKSGESWV QGLTEGEYSD 960 LSVAERLRGL VALIGVANEG NTIRVVLEDR LEAANALKKQ MLAEAQLDKS RLKEENIGRL 1020 DFQSFMGGKA DVQATGVEDG QSPLRDVDNR NIEASPVTAE NQKSIHGSQG VQNQLNGVPV 1080 ERTSAAQDFS MGSDNFLSQQ LAYASKRSRS QLKSYIAHRA EEMYAYRSLP LGQDRRHNRY 1140 WQFVASASRN DPGSGRIFIE LNNGSWRLID TEGAFDALVT ALDTRGIRES HLRLMLQKIE 1200 ASFKENGRKN AHCPNNAGPS KNHVKNEAGE MDSSPDFPSR FDSPESTVCA LNSDTTQSSS 1260 SFRIELDRSE TEKRAALRRY QDFQKWMWKE CFNSSTLGAT KYGKERCRPL FDVCDVCLSC 1320 YYFEDSHCDT CHQTFDAFNR NFDFSEHVIQ CKRKRTLEPW DFHVPCTSVP LARRLLKALI 1380 ALVEVSTPPE ALQSVWTEDR RKMWGEKLNA SSSMEELLQT LTLFETAVKK DFLSSHFALT 1440 EELLGSCKQS GVVRDYLDSG SVPVLPWIPL TTAAVALRLH EIDSAITYVK QAKPEPTADK 1500 EMGEYLNQPM RLLTSRSETE LTEAGLNEYR REDNSTHLKS GRNSFRRGRG GREQGRGKRW 1560 QKKVNNPKSV VSRRNIRGNE NLSQGLRTVG KRTQGQGSGR GRRTVRKRRM KNRAVEETPL 1620 GRMSDIRSSP ESGGESPRNL AEEWDDEKID MKGDEQGEGY EQGELGEGYE QGGALESEDD 1680 EQAVGYEQGN WEIGFDGTSS GWNRGLVEAS DNDLDTSEDD NNVMEEVRDE DSEGDVDVDM 1740 SDASDEMPNA MRNDDGTESE SSDDYSE*

Sequence ? help Back to Top

Protein Sequence Length: 1768 aa Download sequence Send to blast

MEAASEGENQ NKNHESNSKF NNSSEGQSKP KRQMKTPFQL ETLEKAYALD TYPSEAVRAE  60
LSERLGLSDR QLQMWFCHRR LKDKKEGGPP KKQRKLAPAL PEPPMDDLAH GSEPGSDYGS  120
GSGSGSSPFG HAQLRNVVAR GVADDIPMRG RRYYESPQSK LELRAIACVE AQLGEPLREN  180
GPLLGIEFDP LPPDAFGAPI VAEQLKRSAH ALEGKYERHD AKPNKVAPRT LHEYPFPQDH  240
SSIRSDAYGQ VSQSHFHDSA IDGPSARTSS FAVGNEPLSR VHVVHGHASR VRLLSQQERQ  300
AVPYSSPVDD GSVPQRDSFT NVRVNTQFSD PPVVAPENSN VLSEDQINDS ILRMERKRKS  360
EEARIAKEVE AHELRIRKEL EKQDILRRKN EERMRKEMER QDRERRKEEE RLMRERQREE  420
ERLKREQKRE IERREKFLQK EYIRAEKRRQ KEELRKEREV VRRKAALEKA TARRLAKESM  480
ELIEDEQLEL MELAAASKGL SSIISIDLDT LQNLDAFRDS LVAFPPRSVQ LKRPFAIQPW  540
INSEANIGNL LMVWRFLITF ADVLELWPFT LDEFIQAFHD YDSRLLGEIH VALLRLIIKD  600
IEDVARTPTG LGINQNGAAN PGGGHPQIVE GAYAWGFDIR NWQQHLNLLT WPEIFRQLAL  660
SAGFGPQLKK RSIAWSYTPD KDEGKVCQDA ISNLRNGSAA VNAFAVMQEK GLLAPRRSRH  720
RLTPGTVKFA AFHVLSLEGN KGLTVLDLAE KIQKSGLRDL TTSKTPEASI SVALTRDTKL  780
FERIAPSTYR VRAAYRKDPI DAEAVLSAAR KKIQIFENGI LAAEDVDDVE RDDVENDEVE  840
RDEDFECEVD EDPDVDDLAT PSVAKKSPDD YSEVISFSEN GKDSLCGDVG LAVKNEFDKD  900
VSCSPVTGSK DAFCPSASSK QCVSGVDISN SNLDQENMEI DESKSGESWV QGLTEGEYSD  960
LSVAERLRGL VALIGVANEG NTIRVVLEDR LEAANALKKQ MLAEAQLDKS RLKEENIGRL  1020
DFQSFMGGKA DVQATGVEDG QSPLRDVDNR NIEASPVTAE NQKSIHGSQG VQNQLNGVPV  1080
ERTSAAQDFS MGSDNFLSQQ LAYASKRSRS QLKSYIAHRA EEMYAYRSLP LGQDRRHNRY  1140
WQFVASASRN DPGSGRIFIE LNNGSWRLID TEGAFDALVT ALDTRGIRES HLRLMLQKIE  1200
ASFKENGRKN AHCPNNAGPS KNHVKNEAGE MDSSPDFPSR FDSPESTVCA LNSDTTQSSS  1260
SFRIELDRSE TEKRAALRRY QDFQKWMWKE CFNSSTLGAT KYGKERCRPL FDVCDVCLSC  1320
YYFEDSHCDT CHQTFDAFNR NFDFSEHVIQ CKRKRTLEPW DFHVPCTSVP LARRLLKALI  1380
ALVEVSTPPE ALQSVWTEDR RKMWGEKLNA SSSMEELLQT LTLFETAVKK DFLSSHFALT  1440
EELLGSCKQS GVVRDYLDSG SVPVLPWIPL TTAAVALRLH EIDSAITYVK QAKPEPTADK  1500
EMGEYLNQPM RLLTSRSETE LTEAGLNEYR REDNSTHLKS GRNSFRRGRG GREQGRGKRW  1560
QKKVNNPKSV VSRRNIRGNE NLSQGLRTVG KRTQGQGSGR GRRTVRKRRM KNRAVEETPL  1620
GRMSDIRSSP ESGGESPRNL AEEWDDEKID MKGDEQGEGY EQGELGEGYE QGGALESEDD  1680
EQAVGYEQGN WEIGFDGTSS GWNRGLVEAS DNDLDTSEDD NNVMEEVRDE DSEGDVDVDM  1740
SDASDEMPNA MRNDDGTESE SSDDYSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRLKDKKE
2	422	428	LKREQKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016211.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352855.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A498IVJ1	0.0	A0A498IVJ1_MALDO; Uncharacterized protein
STRING	XP_009352854.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1