PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016224.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 180aa    MW: 18998.3 Da    PI: 9.6271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016224.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-201464256
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g+
  Pbr016224.1 14 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARTLRGA 64
                 69*******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-131463IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-221472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-311471IPR001471AP2/ERF domain
CDDcd000182.93E-291472No hitNo description
SMARTSM003804.9E-351477IPR001471AP2/ERF domain
PROSITE profilePS5103222.6821471IPR001471AP2/ERF domain
PRINTSPR003675.2E-111526IPR001471AP2/ERF domain
PRINTSPR003675.2E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MATAAAPSSS REGHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAART  60
LRGAKAKTNF PAPIPSGISL DLNAPSATHW ASHSGRLVDF LHTGVLNDMG SDGATTDTPP  120
LMARREPQQT PVGVAGNAPA GGSNDTVPEG SGFGSTALFL GLVRRGLPID LNEPPPMWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221477569ATERF1
3gcc_A1e-221477569ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6237180.0KJ623718.1 Pyrus x bretschneideri ethylene response factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502204.11e-127PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID61e-47ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A498IVD11e-123A0A498IVD1_MALDO; Uncharacterized protein
STRINGXP_009352875.11e-126(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-49ERF domain protein 12