PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016228.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 784aa    MW: 86465.7 Da    PI: 4.9295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016228.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98e-09208228526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+f+a+ G+C +G++CkF H+
  Pbr016228.1 208 ICDFYAK-GWCIRGSSCKFLHV 228
                  6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.028203230IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025203229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6203227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4208231IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6208228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MPQSADDQSP EPPEFSGSDI EKQEEEEEED PELLEEEVEE EEEEEAEAEE EEAEEEAEGK  60
ENMEDELEGR VEVDMDISDS PIRSHDHHND DYMVANKDAG ILSGQRTSVH LQNEVNGHLC  120
NSEIMDAKAA SSCRVGGEEM ADAIPIRDHL GEEVRSVVNP GDEMKQVDMQ QRNGRKQMDS  180
RSGARETGTT TVSPAAETSG QSKRPAIICD FYAKGWCIRG SSCKFLHVKD NLNSSQPHPE  240
GDVANSTREV QLDEGLRDIT ERSRSPGFRD PLASSSGSDF AFSSLLSSEK IRFLEHIGRQ  300
HQFHEKRKFP TFIGEESNVG LSTDAKKLHS SKDDPGFLSS LKDIERDDQR NWPAVKDKSI  360
FISSLHPEPG FFSTGSISSS GKYLIGKNSS HSSSMEEPAG IWSQRMHRDH SSPLVNLALN  420
SSSRNLSTTA LFPTSRISSW TGFSLPSSYS NLDSSPHDTL KLFDQSRDYR SSTRSSPLLK  480
SSSPFSSSEL KSLPTTVSLC SAEIKTKLSS NDWEPSVPFR PSFILPHAFL SSSGWQYEPL  540
RDSIELPKLA NISGEASFYP EGATGGNKLH LQHGESASGT TRPACDGDTN SMSSHNTYHE  600
KVLDNSCYTR DHNSPVTEAE TAGTSAVCQN GTMTGEENPL GPPHPKGSTK QNKASSATGD  660
SRHQSDGSRH QEGTKLGRFR EKNEVDGEHL TDRDVQQESK AVKNFRAALV DLVKELLKPK  720
WREGSLSKDA HNMIVKRAVE KIISAFQPHQ IPSTIETVEQ YLSACRPKIS KLVEGYVEKY  780
GKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016228.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352887.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBLA0A498IWP90.0A0A498IWP9_MALDO; Uncharacterized protein
STRINGXP_009352887.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-41C3H family protein