PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016236.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 379aa MW: 41065 Da PI: 7.9829

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016236.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Pbr016236.1 69 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 129 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	73	127	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	74	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MLSNCDHEKM ALLISSTTNE WPQMQQDIQI DDIHHQKGLK NNNNAMSSST SSPANRIMEK 60 PGQEQLQLQQ QALKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG 120 GCRKNKRVKR PGSTSSTSSA MDGGTPSSSC SVPSTTAAAN NNNSNPNSHP SHIDQINPLF 180 YGLSSNPFMD TASGFDLHQL NHQAQLGLGF SSSSGTNMIS SDNYRNRFNP ASNSSLPSNY 240 SSMFSTSPSA TAPTVASVLA SKFINGGAFK DIQTRGLHQH NQYFQSLLPF EDLQIAAGSN 300 GEDGSASKDV KVEDHGGQNR LEWNNNNGSS NVNGSMNCQN QITEQMGLSD PTLYWNSSTL 360 GSNWHDPANL GSSVSSLI*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MLSNCDHEKM ALLISSTTNE WPQMQQDIQI DDIHHQKGLK NNNNAMSSST SSPANRIMEK  60
PGQEQLQLQQ QALKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG  120
GCRKNKRVKR PGSTSSTSSA MDGGTPSSSC SVPSTTAAAN NNNSNPNSHP SHIDQINPLF  180
YGLSSNPFMD TASGFDLHQL NHQAQLGLGF SSSSGTNMIS SDNYRNRFNP ASNSSLPSNY  240
SSMFSTSPSA TAPTVASVLA SKFINGGAFK DIQTRGLHQH NQYFQSLLPF EDLQIAAGSN  300
GEDGSASKDV KVEDHGGQNR LEWNNNNGSS NVNGSMNCQN QITEQMGLSD PTLYWNSSTL  360
GSNWHDPANL GSSVSSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016236.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352890.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A498IVP3	0.0	A0A498IVP3_MALDO; Uncharacterized protein
STRING	XP_009352890.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	8e-36	Dof family protein