PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016308.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 402aa    MW: 44774.4 Da    PI: 8.6606
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016308.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32204257255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pbr016308.1 204 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 257
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15201257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28202257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23204257IPR006447Myb domain, plants
PfamPF002492.7E-7205256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSSSSSTSW RRSSHKRHQE GVDLGFWRRA LDSRNSTSDE  60
LSNTNHRPQH YNNITAGTSC NGVNGNLFHP FQFQQSHYFP QVPQADVQQE LQQSDELLGF  120
LRPIRGIPLY QNPPPPPPNN FFPFSSSQKP VNFDNNTATS TSTITSSTPL FQAAAHHHHQ  180
GHHGGLLRSR IFSRFPAKRS IRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV  240
KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENASSG DTTEDIMYEL QNPRRSCEQL  300
PSAQHGSRSI TVQDNKEYYG LWSNSSSREA WLHANPKDSA PANIIPSLDD QEREDTNMID  360
PKGLSYEKIS DISSSSTTIS AGGTSLTPRK PNLEFTLGRS H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16205259458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373473.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6163e-90KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A498JLY70.0A0A498JLY7_MALDO; Uncharacterized protein
STRINGXP_009373473.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-68G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]