PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016310.4
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 833aa    MW: 92669.9 Da    PI: 5.7538
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016310.4genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-21101156156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Pbr016310.4 101 KKRYHRHTAHQIQEMENMFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 156
                  688999***********************************************998 PP
2START163.51.5e-513095362206
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                  la +  +el+k+  a+ep+W++    eng+evl  +e ++                +++ea r+s+vv+m++ +lv  +ld + +W e ++    +a+
  Pbr016310.4 309 LAVSSVAELIKMCRAGEPLWSRNN--ENGKEVLNVEEHARIfppwplnlkqqpsdqCRTEATRDSVVVIMNSINLVDAFLDAN-KWMELFPsivsRAK 403
                  6778899**************999..99999999998877799999*************************************.************** PP

                  EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
        START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                  t++vis +      g lqlm+aelq+ splvp R+  f+Ry++q +++g+w+ivd  +ds  ++  +ss+ R ++ pSg+li++++ng+s+vtw+eh+
  Pbr016310.4 404 TVQVISADpsgqanGSLQLMYAELQVVSPLVPtRETHFLRYCQQnEEEGSWAIVDFPIDSFHDNL-QSSFPRYKRWPSGCLIQDMPNGYSRVTWIEHA 500
                  ***************************************************************98.9******************************* PP

                  E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  + +++ +h+++ + v sg+a+ga++w+a lqrqce+
  Pbr016310.4 501 EIEEKPVHQIFSHYVYSGTAFGAQRWLAVLQRQCER 536
                  **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-2090159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-2296165IPR009057Homeodomain-like
PROSITE profilePS5007117.24898158IPR001356Homeobox domain
SMARTSM003892.1E-2099162IPR001356Homeobox domain
CDDcd000861.94E-19101159No hitNo description
PfamPF000461.3E-18101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084845.848299539IPR002913START domain
SuperFamilySSF559612.75E-32301538No hitNo description
CDDcd088755.57E-116303535No hitNo description
SMARTSM002345.8E-37308536IPR002913START domain
PfamPF018527.2E-44309536IPR002913START domain
SuperFamilySSF559616.04E-16562732No hitNo description
SuperFamilySSF559616.04E-16759797No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MYGHCQVMSS MAMGGGNVVS PETLFSSPIQ NPNFNFMPTH HQLPFQPFSS ILSPPKEENG  60
VLKMMKGKED QMMESGSGSE QIEEKSGNEQ EADNQLQPPK KKRYHRHTAH QIQEMENMFK  120
ECPHPDDKQR MKLSQELGLK PRQVKFWFQN RRTQMKAQQD RSDNAMLRAE NENLKNENYR  180
LQAALSNIMC PNCKGPAMIA DIGLDEQHLR LENARLREEL ERVFCLNSQY TSGQQIQTMA  240
PGAPLMPAFN LDLDMNIYPR HFQEYPMTSS AEMIPMPLLP PHVPSHYPAS AGSWGGVLSD  300
DEKSLAVELA VSSVAELIKM CRAGEPLWSR NNENGKEVLN VEEHARIFPP WPLNLKQQPS  360
DQCRTEATRD SVVVIMNSIN LVDAFLDANK WMELFPSIVS RAKTVQVISA DPSGQANGSL  420
QLMYAELQVV SPLVPTRETH FLRYCQQNEE EGSWAIVDFP IDSFHDNLQS SFPRYKRWPS  480
GCLIQDMPNG YSRVTWIEHA EIEEKPVHQI FSHYVYSGTA FGAQRWLAVL QRQCERVASL  540
MARNISDLGV IPSPEARKNM MNLAQRMIRT FCVSMSTSNG QSWTAISDSP DDTVRITTRK  600
VTEPGQPIGV ILTAVSTTWL PYSHYRVFEL LRDERRRVQL DVLTNGNSLH EVAHIANGSH  660
PGNCISLLRI NVSSNSSQNI EIMLQESCTD ESGSLVVYAT MDVDGIQLAM SGEDPSCIPL  720
LPLGFVIVPV QPIESSAATA VDHGTSSPDQ NQENRIMNSG CLLTVGFQVL ASTSPSAKLN  780
LASVTAMNNH LCNSVQQIIS ALGSSNICTT VTTDNVSVGV TSGGSDHPTT PQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016310.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373485.10.0PREDICTED: homeobox-leucine zipper protein ROC3 isoform X3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A498JPH80.0A0A498JPH8_MALDO; Uncharacterized protein
STRINGXP_009373477.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7