PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016338.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 98aa MW: 10836.5 Da PI: 9.8446

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016338.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7.1e-30	28	78	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQ Pbr016338.1 28 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSLLRIMGLKGLTLYHLKSHLQ 78 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-28	24	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.781	25	85	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.1E-22	28	79	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.96E-14	28	78	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-7	30	78	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MERNIYVSCE GEGNCGYENG VMMTRDPKPR LRWTPDLHDR FVDAVTKLGG PDKATPKSLL 60 RIMGLKGLTL YHLKSHLQVP ANPRYTTNAS HKVVVSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016338.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347087.1	5e-48	PREDICTED: myb family transcription factor PHL11
Refseq	XP_028953847.1	5e-48	myb family transcription factor PHL11-like
Swissprot	C0SVS4	1e-34	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A498HNU9	1e-46	A0A498HNU9_MALDO; Uncharacterized protein
STRING	XP_009347087.1	2e-47	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	4e-34	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]