PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016467.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 706aa    MW: 77570.9 Da    PI: 6.843
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016467.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23121222199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++k+iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ 
  Pbr016467.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFKHIYRGTPRRHLLTTGWSTFVNHKKLVSGDSIVFL--RAENGD 214
                  89****************************996555555..89***********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Pbr016467.1 215 LCVGIRRA 222
                  9****997 PP
2Auxin_resp114.78.3e-38290373183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  Pbr016467.1 290 AATLAANGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 373
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-37115230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-28117227IPR015300DNA-binding pseudobarrel domain
CDDcd100172.82E-20120221No hitNo description
SMARTSM010199.8E-21121223IPR003340B3 DNA binding domain
PfamPF023621.9E-21121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042121223IPR003340B3 DNA binding domain
PfamPF065079.3E-33290373IPR010525Auxin response factor
PROSITE profilePS5174513.986615694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MITFMDSKEK LKEVDRCLDP QLWHACAGGM VQMPLVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRVPPYILCQ VAAIKFMADP ETDEVYAKIR LVPLNGGEAG YEDDGIGGLN GSETPDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFKHIYRGT  180
PRRHLLTTGW STFVNHKKLV SGDSIVFLRA ENGDLCVGIR RAKRGSGSGP ESSSGWNPMG  240
GNCTVPYGGF SAFLREDENK LMRNGNGNSS NSNGSLVGKG KVGPESVSEA ATLAANGQPF  300
EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE  360
PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP TIHLTPFSLP RKKMRLPQYP  420
DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH AHYGLSSSDM HLNKLHTGLF  480
PAGFPPLDHA AAPTKFTNNM VIHKPTISEN VSCLLTMSHF TPTSKKPDDL KPPQLILFGQ  540
PILTEQQISL SSSGDTVSPV LTGNSSSDGN ADRMVNHSDN SGSALHRQSV QERSSCEGFQ  600
WYKDTRNETE LSLETGHCKV FMESEDVGRT LDLSLLGSYD ELYRKLADMF GIDNSETLNH  660
VLYRDGTGAV KHIGDEPFRY GQFPLNRVMA PKDGGPCPFN YQMSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-811839451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016467.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774220.0FJ177422.1 Malus x domestica putative auxin response factor ARF16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373529.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498JZD70.0A0A498JZD7_MALDO; Auxin response factor
STRINGXP_009373529.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]