PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016599.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 222aa MW: 25806.8 Da PI: 10.1568

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016599.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.5	2e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ Pbr016599.2 9 KRIENTISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	72.2	1.5e-24	78	145	4	71
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++ + ++++ +e+++ e+ kL ++ie +qr++R++ GedLe+Lsl+eLq+LeqqL+++lk+iR++K Pbr016599.2 78 RQLNGTNSESQENWSVEYPKLAARIEVIQRKLRNFTGEDLEPLSLRELQNLEQQLDTALKRIRTRKVM 145 56667778889******************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.833	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-34	2	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.36E-40	2	74	No hit	No description
PRINTS	PR00404	2.5E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.5E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-30	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.4E-19	85	147	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.405	88	191	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGRGKVQLKR IENTISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD 60 SSMERILDRY EQYTFAERQL NGTNSESQEN WSVEYPKLAA RIEVIQRKLR NFTGEDLEPL 120 SLRELQNLEQ QLDTALKRIR TRKVMKLPQL ILNLSCIIYR YATSGQLINK RFLINTNSIY 180 NSGIFRTNSC MNPFQRCTRR YKVIPHASVW TLICEGEWKD A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
5f28_A	2e-20	1	86	1	83	MEF2C
5f28_B	2e-20	1	86	1	83	MEF2C
5f28_C	2e-20	1	86	1	83	MEF2C
5f28_D	2e-20	1	86	1	83	MEF2C
6byy_C	2e-20	1	74	1	73	MEF2 CHIMERA
6byy_D	2e-20	1	74	1	73	MEF2 CHIMERA
6bz1_A	2e-20	1	74	1	73	MEF2 CHIMERA
6bz1_B	2e-20	1	74	1	73	MEF2 CHIMERA
6bz1_C	2e-20	1	74	1	73	MEF2 CHIMERA
6bz1_D	2e-20	1	74	1	73	MEF2 CHIMERA
6c9l_A	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	1	74	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016599.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP164023	0.0	KP164023.1 Pyrus pyrifolia clone PpAP1-1 AP1-like MADS-box protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009333659.1	2e-98	PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
Refseq	XP_009373777.1	2e-98	PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
Refseq	XP_018497885.1	2e-98	PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
Swissprot	D7SMN6	2e-81	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A0D4ZYV3	4e-97	A0A0D4ZYV3_PYRPY; AP1-like MADS-box protein
STRING	XP_009333658.1	1e-97	(Pyrus x bretschneideri)
STRING	XP_009373776.1	1e-97	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF588	32	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	1e-71	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]