PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016661.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 247aa    MW: 28953.6 Da    PI: 7.167
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016661.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++++ lG g W+ ++++ g++R++k+c++rw+++l
      Pbr016661.1 13 KGAWTREEDDLLRQCIEILGEGKWHQVPHKAGLNRCRKSCRLRWLNHL 60
                     79********************************************97 PP
2Myb_DNA-binding48.52e-1566109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E +l+++++k+lG++ W++Ia +++ gRt +++k++w++
      Pbr016661.1  66 RGDFTEDEVDLIARLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNT 109
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.19864IPR017930Myb domain
SuperFamilySSF466891.28E-2712107IPR009057Homeodomain-like
SMARTSM007171.4E-141262IPR001005SANT/Myb domain
PfamPF002491.0E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-211466IPR009057Homeodomain-like
CDDcd001679.52E-101560No hitNo description
SMARTSM007174.5E-1465113IPR001005SANT/Myb domain
PROSITE profilePS5129417.7965115IPR017930Myb domain
PfamPF002493.7E-1466109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2167112IPR009057Homeodomain-like
CDDcd001672.00E-969111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEGYNVNLSV MRKGAWTREE DDLLRQCIEI LGEGKWHQVP HKAGLNRCRK SCRLRWLNHL  60
KPNIKRGDFT EDEVDLIARL HKLLGNRWSL IAGRLPGRTS NDVKNYWNTR LRIDSRVKTM  120
KNKFQETRKT IVIRPQPQKF IQSSYYLNSK EPILDHIQSA EDLSTPSQTL SSTKNGNDWW  180
ETLLEDEDTF ERIACPSLQL EEEHFTSLWL DDMQQSSRSC VTFPEVGQSR VDFSFNMDLW  240
DHSKDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221111225125MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7439990.0AB743999.1 Malus domestica MYBP mRNA for MYB transcription factor, complete cds, cultivar: JPP35.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370091.10.0PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV91e-54MY113_ARATH; Transcription factor MYB113
TrEMBLB5STY21e-152B5STY2_CYDOB; R2R3 MYB transcription factor 10
STRINGXP_009370091.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]