PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016792.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 214aa    MW: 23813.9 Da    PI: 5.1826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016792.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-154495156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 + ykGVr+  + g+Wv+e+r p     k+ r++lg+f ++++Aa+a++ a+++l+ge
  Pbr016792.1 44 PVYKGVRQ--RCGKWVCELRQP---DhKKSRIWLGTFTSPDMAARAYDVAALALKGE 95
                 68****86..47******9998...5567*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-104495IPR001471AP2/ERF domain
SMARTSM003809.4E-2945108IPR001471AP2/ERF domain
PROSITE profilePS5103219.49345102IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-1845103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2645103IPR001471AP2/ERF domain
PRINTSPR003671.4E-64657IPR001471AP2/ERF domain
CDDcd000182.01E-2646103No hitNo description
PRINTSPR003671.4E-684104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MANLTDDRSS STSIISVPTL MQTSMGVVKK RKAGRKKFTE TRHPVYKGVR QRCGKWVCEL  60
RQPDHKKSRI WLGTFTSPDM AARAYDVAAL ALKGESASLN FPNETSALPR FESNAYTVKD  120
IQCAALEAAE AFLEVKGKAS SSSSLKLEKV EEEEVRKVVY LDEEELFNMP GLIDSMAEGL  180
ILTPPSLQKV FNWNENDDDD WGNNTTDISL WSD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016792.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352989.21e-158PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ932e-48DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A498I0071e-127A0A498I007_MALDO; Uncharacterized protein
STRINGXP_009352989.11e-143(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.11e-26C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]