PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016912.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 321aa    MW: 35112.9 Da    PI: 7.4709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016912.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174292155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+ +++a+  l+g
  Pbr016912.1 42 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARSYDEAACLLRG 92
                 79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-124292IPR001471AP2/ERF domain
CDDcd000185.63E-324299No hitNo description
SuperFamilySSF541711.05E-1842100IPR016177DNA-binding domain
SMARTSM003803.4E-3543106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2743100IPR001471AP2/ERF domain
PROSITE profilePS5103219.49343100IPR001471AP2/ERF domain
PRINTSPR003673.9E-74455IPR001471AP2/ERF domain
PRINTSPR003673.9E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEFQFQQPKQ VSFAAACIPK SSSKVGKWKG RNNNRRSNNK ASKFVGVRQR PSGRWVAEIK  60
DTTQKIRMWL GTFETAEEAA RSYDEAACLL RGSNARTNFI THVSLDSPLA SRIRNLLNTK  120
KGGGGATKQL ALLHHQSSST STTTSASSDH DHLPPPSKQL VRKSSTCTST SSGSDTTSLS  180
SEVFQDNSLL FDNVYKPDLR NCNEDFELSS SSNTSQSDLP SWVSYQTGVD CFSFAQQAFE  240
FPKHQAAAAL SSAESNTTTT STISTAGEAD SGLTDFERLK VERQISASLY AMNGMQEYME  300
TVHDPNEALW DLPPLCSLFC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14421091381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016912.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353193.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY888e-94ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A498I1J31e-163A0A498I1J3_MALDO; Uncharacterized protein
STRINGXP_009353193.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-38related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]