PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016939.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 380aa    MW: 43380.6 Da    PI: 8.8801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016939.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-0685109123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+  dC  sF+rk++L+rH+  H
  Pbr016939.2  85 YVCSvdDCRSSFRRKDHLNRHLLQH 109
                  99*******************9887 PP
2zf-C2H212.80.00035153177123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++C+   Cgk+F   s L++H ++H
  Pbr016939.2 153 HVCQeiGCGKVFLFASKLRKHESSH 177
                  79********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-780111No hitNo description
Gene3DG3DSA:3.30.160.603.9E-982111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.57585114IPR007087Zinc finger, C2H2
SMARTSM003550.001485109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-4112136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.55E-5112140No hitNo description
PROSITE profilePS5015710.679114144IPR007087Zinc finger, C2H2
SMARTSM003550.013114139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6149177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.83E-5149179No hitNo description
PROSITE profilePS501579.827153182IPR007087Zinc finger, C2H2
SMARTSM003550.13153177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155179IPR007087Zinc finger, C2H2
SMARTSM003559.6185210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187210IPR007087Zinc finger, C2H2
SMARTSM0035550213234IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.49E-7272315No hitNo description
Gene3DG3DSA:3.30.160.602.4E-7274314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7291317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280293317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MREVFDLNGP VSGGRPPVKL HQASLSHVPF SLRNQHFKEV SIGQREALDP NQELQNARAF  60
DLNGPVTGGR PPVKLHQASL NHRPYVCSVD DCRSSFRRKD HLNRHLLQHQ GKLFKCPIEN  120
CNRGFVCQGN MSRHVKELHS EDGTYVGRGQ KQHVCQEIGC GKVFLFASKL RKHESSHVHM  180
DSVEAFCSEA GCMKYFTNDQ CLKDHILSCH QHVMCEICGS KKLNRNIERH LLTHKGGAPS  240
VERIRCSYKG CLHTFSTPWL FLTPFRVMAG HLQKSNLTQH VRAVHLEDKP FACSFSGCGM  300
RFAYKHVRDN HEKTRRHVYA YGDFVEADEQ FQSRPRGGLK RKCPTVEMLL RKRVIPPDQL  360
GLEPDYLSWL LLQDAEDEN*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016939.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374007.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-104TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A498HYA10.0A0A498HYA1_MALDO; Uncharacterized protein
STRINGXP_009374007.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-106transcription factor IIIA