PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017225.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 450aa MW: 50846 Da PI: 9.7691

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017225.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.3e-08	130	171	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l ++++q+ + + Ia +++ Rt +++k+r++k Pbr017225.1 130 WTKEETDQLFELCQQFDLR-FIVIADRFPSSRTVEELKERYYK 171 *****************.********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	3.9E-31	102	176	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.8E-7	124	173	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.33E-8	125	176	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-8	126	175	IPR001005	SANT/Myb domain
CDD	cd11658	1.56E-18	130	172	No hit	No description
Pfam	PF05499	3.5E-7	315	377	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MDAKDILGLS KTSHPASQEK KSRTVKESQR KPEGISREVY ALIGGVPPLM PAVEPLQLKK 60 RPPTDEKITW QWLPFTSSAR KDNLQLFHWV RVVNGVPPMG DYSFAKYNKS VDVVKYTDEE 120 YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFPSSR TVEELKERYY KVSRSILIAR 180 AAASPGDVSE HPIVKEPYKF TQERDRKRAL SMVLSQTKHQ ERKDSEVLAE AKRIAESRIA 240 ARNAKESELP ITFNVERAII PGETLSPSSN SEFPSAMVAP STSMAENTST LASLRMLRVY 300 LRTYALDQMI QAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKSVCAQHL ELRKEILTLL 360 NLQKQLQYKE AEGSSYRDSP YETPGTPKCI FLCADQDRTF VPESTSFGGD VLGERIGKRD 420 QKRKAPGRAE APSSPAQPKR PRKLRASDM*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MDAKDILGLS KTSHPASQEK KSRTVKESQR KPEGISREVY ALIGGVPPLM PAVEPLQLKK  60
RPPTDEKITW QWLPFTSSAR KDNLQLFHWV RVVNGVPPMG DYSFAKYNKS VDVVKYTDEE  120
YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFPSSR TVEELKERYY KVSRSILIAR  180
AAASPGDVSE HPIVKEPYKF TQERDRKRAL SMVLSQTKHQ ERKDSEVLAE AKRIAESRIA  240
ARNAKESELP ITFNVERAII PGETLSPSSN SEFPSAMVAP STSMAENTST LASLRMLRVY  300
LRTYALDQMI QAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKSVCAQHL ELRKEILTLL  360
NLQKQLQYKE AEGSSYRDSP YETPGTPKCI FLCADQDRTF VPESTSFGGD VLGERIGKRD  420
QKRKAPGRAE APSSPAQPKR PRKLRASDM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-21	101	186	4	91	DNA methyltransferase 1-associated protein 1
4iej_A	2e-21	101	186	4	91	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017225.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009374207.1	0.0	PREDICTED: SWR1-complex protein 4-like isoform X1
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A498KNM9	0.0	A0A498KNM9_MALDO; Uncharacterized protein
STRING	XP_009374207.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]