PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017259.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26210.7 Da    PI: 7.3212
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017259.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.94.6e-1560107451
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51 
                  ++++t+eq++ Le  F +++++  +++ +LA++lgL+ rqV vWFqNr
  Pbr017259.1  60 KRKLTAEQVDLLELNFGNEHKLESDKKDRLASELGLDPRQVAVWFQNR 107
                  5689*******************************************9 PP
2HD-ZIP_I/II69.19.7e-2359107250
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnr 50 
                  kkr+l++eqv lLE +F +e+kLe+++K +la+eLgl+prqvavWFqnr
  Pbr017259.1  59 KKRKLTAEQVDLLELNFGNEHKLESDKKDRLASELGLDPRQVAVWFQNR 107
                  9***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-1257107IPR009057Homeodomain-like
SMARTSM003891.3E-757118IPR001356Homeobox domain
PROSITE profilePS5007112.82759107IPR001356Homeobox domain
CDDcd000863.57E-1259107No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1460107IPR009057Homeodomain-like
PfamPF000462.9E-1260107IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTTNSHQIVE DDHQMLLISH LYSASDVYTQ IVPPQGASKP ARRRRRKSKG GEAGGVGLKK  60
RKLTAEQVDL LELNFGNEHK LESDKKDRLA SELGLDPRQV AVWFQNRGMD KPHLAAISLD  120
SKRLLFQLSW DVRTILFKVV GVGPLGPRRD SFGERHMSKL KDQLSEAEKE IQRLSQRVDH  180
GGSSNSPSSS LSMEAIDPPF LGEFGVEEYD DVFYMPQNNY IHGMEWMNLY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14260RRRRKSKGGEAGGVGLKKR
24348RRRKSK
34461RRKSKGGEAGGVGLKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017259.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374234.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232087e-51ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A498I2271e-110A0A498I227_MALDO; Uncharacterized protein
STRINGXP_009374234.11e-113(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-44homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]