PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017281.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 863aa    MW: 93514.4 Da    PI: 4.6535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017281.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11683731247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+  E+e l  +v+++G+g+Wk+I +      + Rt+ ++k++w++ 
      Pbr017281.1 683 KRWSLLEEETLRTGVQKYGKGNWKLILNSYRdifEERTEVDLKDKWRNM 731
                      59*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.739677736IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-11678731IPR009057Homeodomain-like
SuperFamilySSF466891.56E-14679736IPR009057Homeodomain-like
SMARTSM007171.3E-7681734IPR001005SANT/Myb domain
CDDcd116608.47E-20683732No hitNo description
PfamPF002498.5E-9684731IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.110.102.9E-15755837No hitNo description
CDDcd019606.68E-24755837No hitNo description
SuperFamilySSF476991.77E-17755838IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003828.3E-8756772IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003828.3E-8776790IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003828.3E-8797812IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003828.3E-8814831IPR000528Plant lipid transfer protein/Par allergen
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006869Biological Processlipid transport
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MDSDVDVSRW VIELLLRDRE KDCIAKRVLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS  60
ESILETLETI EDLDIREGIS TTESMKAAYC AVATECTVKF LVGFMGKPSG KYLEAVDRIW  120
RGRVGVLERS GRSQLVSAEL RHRMDEVEAG VWDLRVSKKL SRMNTRNDAL RLLAVYVKAA  180
LALLGPPFIT WAIRLNVPKE VADLEADQIT VANEANVGCG SEVEGQKKKG AYAGDGPELE  240
VQMANGDNVG AGVSELENQM ANRANVGGDG GSELDAQMAN QANVGVRGLD LEAETENETT  300
VGGRSDMEVQ MENGTDAGDG SELEEQMVNG TNVGDGDQLE EQTRKEANVT GDSELEAQMM  360
SGASLVDRSE PESQTVNGTN EGVRSQGQAQ TTNGSNVGSQ SALEEQPLNG TNLVDESELG  420
PISVAVPLKE VRAGSLPSAN GELDLSIDHT TKDKENQSAV PRHKHLAHRR TRGPIRIGDA  480
EDSSTEVPNR KFGSLSSPEV NKAQEALKSS ISELQEVVTD PLPDALRVSE TVRSGLAVRS  540
ANHVNGNVGA DNPSIEKGAG PVQSNNDNVG NLPSRHQNDP QSSGIEKDVP NPPVDQGGTE  600
SVQTDAANLR NASLNNQNNV ARPSLMERNS TACTFEWEDS IDTSQEGTKK DAGRLHLPSP  660
KRTAVSPLKK YGNIRLTKRR KVKRWSLLEE ETLRTGVQKY GKGNWKLILN SYRDIFEERT  720
EVDLKDKWRN MEGAAFTVVL LSMLVTAPYT VNATVTCGQV VTLLTPCIPF GVFGGDVPPD  780
CCAGIKGLHD IQNTAEDRRT ACSYVQQGAA MIPGLDYDRV NTLGDRCGSP CPYTFTPLLT  840
APSKPCVNLY TCPFLLLNFT RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2alg_A4e-16755836283non-specific lipid transfer protein
2alg_B4e-16755836283non-specific lipid transfer protein
2b5s_A4e-16755836283Non-specific lipid transfer protein
2b5s_B4e-16755836283Non-specific lipid transfer protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017281.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374383.10.0PREDICTED: uncharacterized protein LOC103963301
TrEMBLA0A498ISV50.0A0A498ISV5_MALDO; Uncharacterized protein
STRINGXP_009374383.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-15MYB_related family protein