PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017591.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 240aa    MW: 27633.3 Da    PI: 8.4717
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017591.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.93.6e-25126211186
     trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++ ev+aLi+ r   e+++  +g  ++  Wee+s km+e+g+ rs  +C+ekwen+nk+++++  +++kr + + + cpyf++le
  Pbr017591.2 126 RWPEAEVQALITQRAAFEHKFCvAGTPRGRIWEEISVKMHETGYVRSGRKCREKWENINKYFRRCMGSDNKR-PANAKLCPYFHELE 211
                  8********************955899*******************************************98.88889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-18125211No hitNo description
CDDcd122032.48E-18125190No hitNo description
PROSITE profilePS500906.586126184IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEQQEQMHKQ LMEMVEKKEE RLAREEAWKQ QELDRLKRDK EIRAQETSRN LALISFIQNY  60
LGYEIQVPQP SAATAPEQAP APTAAPILIS VVPKYDHQRV EGNGKADNGM QRDLMLVSSC  120
DATDRRWPEA EVQALITQRA AFEHKFCVAG TPRGRIWEEI SVKMHETGYV RSGRKCREKW  180
ENINKYFRRC MGSDNKRPAN AKLCPYFHEL ELLHKSALAS FGNGFNRTSN QNEANIEKQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017591.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374902.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLA0A498JZQ91e-124A0A498JZQ9_MALDO; Uncharacterized protein
STRINGXP_009374902.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-34Trihelix family protein