PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017979.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 153aa MW: 17641.2 Da PI: 10.2074

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017979.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.5	3.8e-15	64	118	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+++NRe+ArrsR RKk +e L+ +v+ L+ eN++Lk++l +++ l Pbr017979.1 64 RKRRRMMSNRESARRSRWRKKRHLEDLTSEVDRLKIENQELKNRLGLVAQNCHVL 118 6789*******************************************99999866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-12	58	118	No hit	No description
SMART	SM00338	6.6E-14	60	124	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.082	62	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-13	64	119	No hit	No description
Pfam	PF00170	1.3E-12	64	118	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.52E-15	65	116	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MMKSSSVMPF IHEPAHMGRF KCPVQETVLT TAEIQELLSL LQAGNSASPS SEGSNREADT 60 VDERKRRRMM SNRESARRSR WRKKRHLEDL TSEVDRLKIE NQELKNRLGL VAQNCHVLWR 120 ENDRMTSESL ALRARLSDLY RILIAMQTQC SQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	67	RKRRR
2	65	84	RRRMMSNRESARRSRWRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017979.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009350337.1	1e-109	PREDICTED: bZIP transcription factor 2-like
Refseq	XP_009375134.1	1e-109	PREDICTED: bZIP transcription factor 2-like
Swissprot	Q9LQ65	2e-26	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	A0A498J9Z7	2e-94	A0A498J9Z7_MALDO; Uncharacterized protein
STRING	XP_009350337.1	1e-108	(Pyrus x bretschneideri)
STRING	XP_009375134.1	1e-108	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	7e-29	basic leucine-zipper 4

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]