PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018056.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 461aa    MW: 51003.4 Da    PI: 6.5948
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018056.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.38.5e-88474492373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn...........sseelaal..... 81 
                  ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++   +s + +al +++++              s      +     
  Pbr018056.1  47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKvfPTSWILRALISRASK--VfptpmnfngssS------Tstips 136
                  689************************************************99943344445554433333..1223333555442......022233 PP

         GRAS  82 ......kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakf 168
                        +l  ++++ P+++f++ + N+aI +a+eg+ +vHi+Df+i++++QWp+L++aL +Rpegpp lRiT+ +   ++    + + ee+g rL +f
  Pbr018056.1 137 rlmsvtELagYVDLIPWHRFGYCASNSAICKAIEGCPKVHILDFSITHCMQWPTLIDALEKRPEGPPLLRITVPHWRPQVpplLNVSSEEVGLRLGNF 234
                  3333333388***************************************************************99866668999999*********** PP

         GRAS 169 Aeelgvpfefnvlvak.rledl.....eleeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                   +  +vpfefnv+  + +le l     ++++L ++++E+l+Vn++  l +l          ++++s    r+++L++++sl+P+++vvv++++d++++
  Pbr018056.1 235 SRFRNVPFEFNVIENSsSLELLlgtqlNPSSLGLREDEVLVVNCQNWLRYLSneplggipgHQDGS---MRNTFLNTIRSLNPRIIVVVDEDSDLTAP 329
                  ************9444366655666669************************55555544444444...555************************** PP

         GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                  s+  r++ +++y +  fdsle+ lp++s +r+++E   +g +i+n++  +g++r+er e+  + ++rl++ GF+++p+ e++ak++k+ll +++  g+
  Pbr018056.1 330 SLSSRITTCFNYLWIPFDSLETFLPKDSTQRMNYESD-VGHKIENIIGFKGQQRIERLESGVTMSQRLRNIGFSSAPFCEETAKEVKALLDEHA-SGW 425
                  *************************************.********************************************************.889 PP

         GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                   ++ e++ lvl+Wk+++ v+++aW
  Pbr018056.1 426 GMKREEDMLVLTWKGHNSVFATAW 449
                  999999****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.08920431IPR005202Transcription factor GRAS
PfamPF035142.9E-8547449IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MKTEVRGSIT SVSLQNPSTA LFTTSQGKSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VFPTSWILRA LISRASKVFP  120
TPMNFNGSSS TSTIPSRLMS VTELAGYVDL IPWHRFGYCA SNSAICKAIE GCPKVHILDF  180
SITHCMQWPT LIDALEKRPE GPPLLRITVP HWRPQVPPLL NVSSEEVGLR LGNFSRFRNV  240
PFEFNVIENS SSLELLLGTQ LNPSSLGLRE DEVLVVNCQN WLRYLSNEPL GGIPGHQDGS  300
MRNTFLNTIR SLNPRIIVVV DEDSDLTAPS LSSRITTCFN YLWIPFDSLE TFLPKDSTQR  360
MNYESDVGHK IENIIGFKGQ QRIERLESGV TMSQRLRNIG FSSAPFCEET AKEVKALLDE  420
HASGWGMKRE EDMLVLTWKG HNSVFATAWV PNPNALLIED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-574745188474Protein SHORT-ROOT
5b3h_B9e-584745134420Protein SHORT-ROOT
5b3h_E9e-584745134420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018056.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353231.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A498J7T60.0A0A498J7T6_MALDO; Uncharacterized protein
STRINGXP_009353231.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein