PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018291.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 550aa    MW: 61308.2 Da    PI: 6.109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018291.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.36.8e-801605412374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilkfshl 96 
                  ++lL  cA a++ g+ +++q+lL  l+elas +gd+++Rlaa+ + AL+++l++s+s+  +     +p + ++++     ++l  f+evsP++ f + 
  Pbr018291.1 160 EQLLNPCASAITGGNSTRVQHLLFVLHELASVTGDANHRLAAHGLHALNQHLSSSSSSAPNGSasaAPVTFTSTEPRFFQKSLMKFYEVSPWFAFPNN 257
                  689**************************************************96666544431014444444444444444445************* PP

         GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvl 181
                  +aN+ Il+ +++e    +++Hi+D ++s+G+QWp+Ll+aL+ Rp ++pp ++iT+++ +e++              +  + L +fA+ ++++++++ l
  Pbr018291.1 258 IANSSILQLIAEEfdrtRTLHIVDVGVSHGMQWPTLLEALTHRPgGPPPLVKITVIAGAENNqnrgtpfaVGPPGDNFSNGLLSFAKYMNINLQIKRL 355
                  ****9998888777776999************************55566*******9888777778777767778899999****************9 PP

         GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklp 276
                    + l++l+ + ++ +++E+l+V+++++lh+l    +++++er+e+Lk ++s++Pk v+++e+++++   n ++F+++f++ +ey + ++ds+++ + 
  Pbr018291.1 356 DDQPLKTLNAQLIDASNDETLIVCVQFRLHQLN---HNTPDERTEFLKSLRSMEPKGVILSENNMECscnNCGDFATGFSRQVEYLWRFLDSTSVAF- 449
                  999*****************************8...77777889*******************9665446778********************9996. PP

         GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + r + Er++++ e+ ++++++g++    +e +ekW er++++GF    ++e+a +  ++llrk++ +++++v+e++g++ l Wk++p+ ++S W
  Pbr018291.1 450 ---KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWGERMRRVGFVGEVFGEDAIDGGRALLRKYDsNWEMKVDEKDGCVGLWWKGQPVSFCSLW 540
                  ...77888888888888999**999999....9************************************9999************************* PP

         GRAS 374 r 374
                  +
  Pbr018291.1 541 K 541
                  8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.231133520IPR005202Transcription factor GRAS
PfamPF035142.4E-77160541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTTEQPEPNS TSDHILDWLE DSVTFFPSFW DDPYHSNDID GGLQWWDENH DLVHPTTNPT  60
CLNNPTGISI PTTTTGPPNP ANLNHPSPTD SSKKRKASPE EQQIDRKNHH GXXXXXXXXX  120
XXXXXXXXXX XXXXXXTAVR SILPSRGTNQ VKSKEGRWAE QLLNPCASAI TGGNSTRVQH  180
LLFVLHELAS VTGDANHRLA AHGLHALNQH LSSSSSSAPN GSASAAPVTF TSTEPRFFQK  240
SLMKFYEVSP WFAFPNNIAN SSILQLIAEE FDRTRTLHIV DVGVSHGMQW PTLLEALTHR  300
PGGPPPLVKI TVIAGAENNQ NRGTPFAVGP PGDNFSNGLL SFAKYMNINL QIKRLDDQPL  360
KTLNAQLIDA SNDETLIVCV QFRLHQLNHN TPDERTEFLK SLRSMEPKGV ILSENNMECS  420
CNNCGDFATG FSRQVEYLWR FLDSTSVAFK GRESEERRVM EGEAAKALTN RGEMNEGKEK  480
WGERMRRVGF VGEVFGEDAI DGGRALLRKY DSNWEMKVDE KDGCVGLWWK GQPVSFCSLW  540
KPHESEGNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-3715354281474Protein SHORT-ROOT
5b3h_B4e-3715354227420Protein SHORT-ROOT
5b3h_E4e-3715354227420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018291.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375460.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A498J5W90.0A0A498J5W9_MALDO; Uncharacterized protein
STRINGXP_009375460.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-160GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]