PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018354.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 180aa MW: 19921.8 Da PI: 8.4913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018354.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	37	85	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + ++ Ka iL + ++Y++ Lq Pbr018354.1 37 NSHSLAERARREKISMSMKLLQSLVPGC----DQITGKARILDEIIKYVQLLQ 85 58***********************9....9***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-16	32	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.44E-9	32	89	No hit	No description
PROSITE profile	PS50888	14.437	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-15	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	37	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-7	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MNKNRANKQS KVAAADKAVQ FQRDGVRVKA RRGQATNSHS LAERARREKI SMSMKLLQSL 60 VPGCDQITGK ARILDEIIKY VQLLQNQVEC LTAQLASVDL MLYFCELNQS ANPSASERLC 120 CLEPQFSSVL EPSPTQFGSL VDVTPTSASI LLTEEQKASL IHQAIWEKKE NSEMGNRLD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018354.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378817.1	1e-131	PREDICTED: transcription factor bHLH137-like
Swissprot	Q9SRT2	2e-30	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A498I9X1	1e-100	A0A498I9X1_MALDO; Uncharacterized protein
STRING	XP_009378817.1	1e-130	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17860	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	9e-33	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]