PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018420.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 251aa MW: 26934.4 Da PI: 10.3523

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018420.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	66.5	9.2e-21	16	96	27	113
TCP 27 ecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksaasalnlake 113 ++ r+ +Lq++LG+++d++tieWLlqqa+p+++++tgt++++a+++ ++ s +ss+s+ sa +sk++++s + al+la++ Pbr018420.1 16 QTGLRLWELQRKLGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFStSNISLRSSGSS-------LSASPSKSAPHSFHGALALAHH 96 5667899*************************************999666666666552.......2222444444444444555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	13.235	1	51	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.7E-21	16	88	IPR005333	Transcription factor, TCP
Pfam	PF01778	1.2E-18	180	245	IPR029004	Ribosomal L28e/Mak16

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAPLLLFRWG ERALLQTGLR LWELQRKLGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN 60 FSTSNISLRS SGSSLSASPS KSAPHSFHGA LALAHHPHYD EGFAHSGLMG FHQSPSPPPV 120 TISTASQFTL PHNSLHFCSA HPPYHSTHPS PLDKPTEPPS LSPSANQRNP GAMTTVPGQL 180 IWKIVKKNNS FLVKEFGRGN AGVRFSKEPN NLYNLHSYKH SGLANKKTVS IQAGGKDQSV 240 VLATTATRSC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4v7e_Cr	6e-32	173	248	1	77	60S ribosomal protein L28E

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018420.1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-20	TCP family protein